SRR2934004.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934004.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	217225
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	1255	0.5777419726090459	TruSeq Adapter, Index 23 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGCT	913	0.42030153067096326	TruSeq Adapter, Index 22 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	851	0.39175969616756817	TruSeq Adapter, Index 23 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	766	0.3526297617677523	TruSeq Adapter, Index 23 (95% over 23bp)
GAATCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC	651	0.2996892622856485	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGC	560	0.25779721486937507	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCG	518	0.23846242375417195	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTT	393	0.18091840257797215	No Hit
TTTATGGGGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA	286	0.13166072045114513	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGTTCTACT	268	0.12337438140177234	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	256	0.11785015536885718	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGTTCG	20	7.020644E-4	45.0	1
GTCATAC	20	7.020644E-4	45.0	39
ACACGTG	25	3.88033E-5	45.0	42
ACCGGCG	25	3.88033E-5	45.0	20
ACACGCG	40	6.7702786E-9	45.0	36
ACTGCAT	20	7.020644E-4	45.0	38
GTACACG	25	3.88033E-5	45.0	16
ACGTTGC	20	7.020644E-4	45.0	15
CCCTAGC	35	1.2058445E-7	45.0	21
TGGGTAC	50	2.1827873E-11	45.0	6
GGCGTAC	20	7.020644E-4	45.0	8
GACCGAT	80	0.0	45.0	9
CACGCCA	20	7.020644E-4	45.0	27
TTCGTCG	20	7.020644E-4	45.0	1
TTCCGCG	20	7.020644E-4	45.0	1
CATTCTA	25	3.88033E-5	45.0	45
TATGCGG	20	7.020644E-4	45.0	2
ACTTACT	90	0.0	45.0	38
TCTAGCG	35	1.2058445E-7	45.0	1
ACGGGCA	25	3.88033E-5	45.0	5