##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934004.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 217225 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.845538036597997 31.0 30.0 31.0 25.0 34.0 2 30.08558407181494 31.0 30.0 33.0 26.0 34.0 3 30.178561399470595 31.0 30.0 33.0 25.0 34.0 4 33.91880308435954 35.0 33.0 37.0 28.0 37.0 5 34.26435262976177 35.0 35.0 37.0 32.0 37.0 6 33.770242835769366 35.0 35.0 37.0 29.0 37.0 7 34.22896075497756 35.0 35.0 37.0 31.0 37.0 8 34.267455403383586 35.0 35.0 37.0 31.0 37.0 9 35.533782943952126 37.0 35.0 39.0 30.0 39.0 10 35.07633099320981 37.0 34.0 39.0 30.0 39.0 11 35.321841408677635 37.0 34.0 39.0 30.0 39.0 12 35.24702957762688 37.0 34.0 39.0 30.0 39.0 13 35.133538957302335 37.0 34.0 39.0 29.0 39.0 14 35.75066866152607 38.0 34.0 40.0 27.0 41.0 15 36.09385199677754 38.0 34.0 40.0 30.0 41.0 16 36.26016342502014 38.0 34.0 40.0 30.0 41.0 17 36.03297502589481 38.0 34.0 40.0 30.0 41.0 18 36.12485211186558 38.0 34.0 40.0 30.0 41.0 19 36.12393140752676 38.0 34.0 40.0 30.0 41.0 20 36.181268270226724 38.0 34.0 40.0 30.0 41.0 21 35.834365289446424 38.0 34.0 40.0 29.0 41.0 22 36.01499827367937 38.0 34.0 40.0 30.0 41.0 23 36.14085395327425 38.0 34.0 40.0 30.0 41.0 24 36.054943031419036 38.0 34.0 40.0 30.0 41.0 25 35.533741512256874 38.0 34.0 40.0 28.0 41.0 26 35.65608470479917 38.0 34.0 40.0 29.0 41.0 27 35.659564967199906 38.0 34.0 40.0 29.0 41.0 28 35.430484520658304 38.0 34.0 40.0 27.0 41.0 29 35.46996892622857 38.0 34.0 40.0 28.0 41.0 30 35.052908274830244 37.0 34.0 40.0 27.0 41.0 31 35.157463459546555 37.0 34.0 40.0 27.0 41.0 32 35.29026585337783 37.0 34.0 40.0 27.0 41.0 33 35.34008056162965 38.0 34.0 40.0 28.0 41.0 34 35.28923926804005 38.0 34.0 40.0 27.0 41.0 35 35.32371964552883 38.0 34.0 40.0 27.0 41.0 36 35.09883761077224 37.0 33.0 40.0 27.0 41.0 37 35.10473011854069 37.0 33.0 40.0 27.0 41.0 38 34.95718724824491 37.0 33.0 40.0 27.0 41.0 39 34.91691564046496 37.0 33.0 40.0 26.0 41.0 40 34.86614339970077 37.0 33.0 40.0 26.0 41.0 41 34.73519622511221 37.0 33.0 40.0 26.0 41.0 42 34.97024283576936 37.0 33.0 40.0 27.0 41.0 43 34.911690643342155 37.0 33.0 40.0 27.0 41.0 44 34.82577051444355 37.0 33.0 40.0 26.0 41.0 45 34.925929335941994 37.0 33.0 40.0 27.0 41.0 46 34.78843595350443 37.0 33.0 40.0 26.0 41.0 47 34.7770790654851 37.0 33.0 40.0 26.0 41.0 48 34.770040280814825 37.0 33.0 40.0 26.0 41.0 49 34.718319714581654 37.0 33.0 40.0 26.0 41.0 50 34.5119668546438 36.0 33.0 40.0 26.0 41.0 51 33.424076418460125 35.0 32.0 39.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 14.0 10 22.0 11 28.0 12 29.0 13 16.0 14 15.0 15 21.0 16 26.0 17 57.0 18 102.0 19 236.0 20 389.0 21 614.0 22 911.0 23 1321.0 24 1825.0 25 2286.0 26 3011.0 27 3650.0 28 4677.0 29 5838.0 30 7487.0 31 9445.0 32 11963.0 33 15468.0 34 21331.0 35 21399.0 36 24584.0 37 30169.0 38 34747.0 39 15542.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.252388076878812 4.800552422603292 53.80918402577972 18.137875474738173 2 19.260674415928186 6.037518701806882 53.04361836805156 21.65818851421337 3 20.319944757739673 5.748417539417654 51.755552998043505 22.17608470479917 4 21.373230521348834 4.886177926113477 47.125330878121765 26.61526067441593 5 19.912533087812175 6.462884106341352 48.52572217746577 25.09886062838071 6 21.4915410288871 7.981125561054206 51.70215214639199 18.825181263666703 7 80.86914489584532 2.6553113131545634 11.637242490505237 4.838301300494878 8 81.7171135918978 4.400506387386351 7.799286454137415 6.083093566578433 9 75.01622741397169 6.1180803314535614 10.99182874899298 7.87386350558177 10 39.525837265508116 28.848889400391297 16.989296812061227 14.635976522039359 11 31.71458165496605 25.59465991483485 24.372885257221775 18.31787317297733 12 27.970077108988377 21.292668891702153 30.731729773276555 20.005524226032914 13 25.385660029922892 25.433536655541488 30.26217056047877 18.91863275405685 14 18.528254114397512 29.64621935780872 29.868109103464153 21.957417424329613 15 16.278052710323397 26.25664633444585 36.98008976867303 20.485211186557716 16 18.47715502359305 24.317642996892623 33.49798595925883 23.707216020255494 17 18.662676947865116 25.378294395212336 28.775233053285763 27.183795603636785 18 22.01726320635286 22.76303372079641 30.816894924617333 24.402808148233397 19 23.433766831626194 24.78259868799632 27.852226953619518 23.93140752675797 20 26.0527103233974 24.76556565772816 28.45390723903786 20.727816779836576 21 25.102543445735986 26.309586833927955 28.154678328921623 20.433191391414432 22 21.710208309356656 25.895269881459313 27.666705029347447 24.727816779836576 23 20.99390033375532 25.9330187593509 27.33248935435608 25.74059155253769 24 22.564621935780874 23.50558177005409 29.309241569800896 24.620554724364137 25 19.776268845666937 26.166877661410982 27.423639083899182 26.633214409022905 26 19.928185061572105 27.016687766141096 26.936586488663828 26.11854068362297 27 21.618137875474737 26.46288410634135 28.291402923236276 23.627575094947634 28 18.35055817700541 25.581309701921974 33.0169179422258 23.05121417884682 29 19.30210611117505 24.199332489354354 31.700771089883762 24.797790309586834 30 21.85660029922891 24.700195649672 29.34146622165957 24.10173782943952 31 21.31476579583381 27.164000460352167 28.028081482333985 23.493152261480034 32 22.206467947980205 27.90838991828749 26.84083323742663 23.044308896305672 33 21.62918632754057 25.385660029922892 27.36563471055357 25.619518931982967 34 20.150995511566347 24.91518011278628 29.07998618943492 25.853838186212453 35 19.83841638853723 25.392104960294624 28.177695937392105 26.59178271377604 36 21.803659799746804 25.453792150995515 27.493612613649443 25.24893543560824 37 20.39129934399816 26.768557946829326 30.050868914719757 22.789273794452754 38 19.970997813327195 26.239152952008286 28.170330302681553 25.619518931982967 39 21.022902520428126 24.095753251237195 29.462538842214293 25.41880538612038 40 21.22821958798481 23.69340545517321 29.584532167107835 25.493842789734146 41 18.184371043848543 24.69651283231672 28.377488778915872 28.741627344918864 42 21.001265968465876 24.487052595235355 27.89365864886638 26.618022787432388 43 21.977672919783632 23.822304062607895 27.940154217976755 26.259868799631718 44 19.4052249971228 23.39279548854874 29.109448728277133 28.092530786051327 45 20.272988836459895 23.061341926573828 27.351824145471287 29.313845091494994 46 20.807918057313845 25.05282541143975 29.096558867533663 25.042697663712744 47 18.112095753251236 24.95246863850846 31.870180688226498 25.065254920013814 48 18.872597537115894 23.11704453907239 30.575670387846703 27.434687535965015 49 19.76890321095638 22.13465300955231 32.9883761077224 25.108067671768904 50 19.89642076188284 22.512141788468178 31.1414432040511 26.44999424559788 51 18.927839797445046 22.88686845436759 27.74772701116354 30.437564737023827 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 117.0 1 183.5 2 250.0 3 411.0 4 572.0 5 444.0 6 316.0 7 326.0 8 336.0 9 348.5 10 361.0 11 407.5 12 454.0 13 506.5 14 559.0 15 461.0 16 363.0 17 468.5 18 574.0 19 624.5 20 675.0 21 775.0 22 875.0 23 860.0 24 845.0 25 1027.0 26 1710.5 27 2212.0 28 2528.5 29 2845.0 30 2911.5 31 2978.0 32 3499.5 33 4021.0 34 4583.0 35 5145.0 36 5344.0 37 5543.0 38 6379.5 39 7216.0 40 8651.0 41 10086.0 42 12191.0 43 14296.0 44 14936.5 45 15577.0 46 19194.5 47 22812.0 48 23496.0 49 24180.0 50 23244.0 51 22308.0 52 19127.0 53 15946.0 54 14084.5 55 12223.0 56 10928.0 57 9633.0 58 9382.0 59 9131.0 60 7899.5 61 6668.0 62 6370.5 63 6073.0 64 4930.0 65 3787.0 66 3125.0 67 2463.0 68 2034.0 69 1605.0 70 1413.0 71 1221.0 72 901.0 73 581.0 74 544.0 75 391.0 76 275.0 77 218.0 78 161.0 79 139.5 80 118.0 81 99.0 82 80.0 83 46.5 84 13.0 85 9.0 86 5.0 87 7.0 88 9.0 89 5.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 217225.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.53297272413396 #Duplication Level Percentage of deduplicated Percentage of total 1 76.10507647971625 31.608700656001844 2 9.489026823320772 7.882149844631142 3 3.327421857681224 4.145931637702843 4 1.7679006872090446 2.9370468408332373 5 1.1471957437375304 2.3823224766946716 6 0.8689869208601196 2.1654966049027506 7 0.7714475726003103 2.242835769363563 8 0.7071602748836179 2.34963747266659 9 0.6572821990689426 2.4568995281390267 >10 5.026601640434493 34.47715502359305 >50 0.09199733983595655 2.5176660145010934 >100 0.032143648858346266 2.295776268845667 >500 0.0066504101086233645 1.9606398895154795 >1k 0.0011084016847705607 0.5777419726090459 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC 1255 0.5777419726090459 TruSeq Adapter, Index 23 (95% over 23bp) CTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGCT 913 0.42030153067096326 TruSeq Adapter, Index 22 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC 851 0.39175969616756817 TruSeq Adapter, Index 23 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC 766 0.3526297617677523 TruSeq Adapter, Index 23 (95% over 23bp) GAATCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC 651 0.2996892622856485 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGC 560 0.25779721486937507 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCG 518 0.23846242375417195 No Hit GAATGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTT 393 0.18091840257797215 No Hit TTTATGGGGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA 286 0.13166072045114513 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGTTCTACT 268 0.12337438140177234 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 256 0.11785015536885718 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4557486477155024 0.0 2 0.0 0.0 0.0 1.9362412245367706 0.0 3 0.0 0.0 0.0 2.515824605823455 0.0 4 0.0 0.0 0.0 3.417654505696858 0.0 5 0.0 0.0 0.0 5.048682241915065 0.0 6 0.0 0.0 0.0 5.9960870065600185 0.0 7 0.0 0.0 0.0 6.741397168834158 0.0 8 0.0 0.0 0.0 7.903326044423984 0.0 9 0.0 0.0 0.0 8.33145356197491 0.0 10 0.0 0.0 0.0 9.453792150995511 0.0 11 0.0 0.0 0.0 11.147888134422834 0.0 12 0.0 0.0 0.0 12.952468638508458 0.0 13 0.0 0.0 0.0 13.719875704914259 0.0 14 0.0 0.0 0.0 14.036597997468062 0.0 15 0.0 0.0 0.0 14.421452411094487 0.0 16 0.0 0.0 0.0 15.143744964898147 0.0 17 0.0 0.0 0.0 16.293244331913915 0.0 18 0.0 0.0 0.0 17.587754632293706 0.0 19 0.0 0.0 0.0 18.476234319254228 0.0 20 0.0 0.0 0.0 19.321440902290252 0.0 21 0.0 0.0 0.0 20.37518701806882 0.0 22 0.0 0.0 0.0 21.35021291287835 0.0 23 0.0 0.0 0.0 22.297157325353897 0.0 24 0.0 0.0 0.0 23.087582000230174 0.0 25 0.0 0.0 0.0 23.76153757624583 0.0 26 0.0 0.0 0.0 24.407872022096903 0.0 27 0.0 0.0 0.0 25.062032454827943 0.0 28 0.0 0.0 0.0 25.676602600989757 0.0 29 0.0 0.0 0.0 26.359304868224193 0.0 30 0.0 0.0 0.0 27.11474277822534 0.0 31 0.0 0.0 0.0 27.80757279318679 0.0 32 0.0 0.0 0.0 28.48290942571067 0.0 33 0.0 0.0 0.0 29.175739440672114 0.0 34 0.0 0.0 0.0 29.851996777534815 0.0 35 0.0 0.0 0.0 30.527793762228104 0.0 36 0.0 0.0 0.0 31.178271377603867 0.0 37 0.0 0.0 0.0 31.81862124525262 0.0 38 0.0 0.0 0.0 32.46955921279779 0.0 39 4.6035216940959836E-4 0.0 0.0 33.210726205547246 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTGTTCG 20 7.020644E-4 45.0 1 GTCATAC 20 7.020644E-4 45.0 39 ACACGTG 25 3.88033E-5 45.0 42 ACCGGCG 25 3.88033E-5 45.0 20 ACACGCG 40 6.7702786E-9 45.0 36 ACTGCAT 20 7.020644E-4 45.0 38 GTACACG 25 3.88033E-5 45.0 16 ACGTTGC 20 7.020644E-4 45.0 15 CCCTAGC 35 1.2058445E-7 45.0 21 TGGGTAC 50 2.1827873E-11 45.0 6 GGCGTAC 20 7.020644E-4 45.0 8 GACCGAT 80 0.0 45.0 9 CACGCCA 20 7.020644E-4 45.0 27 TTCGTCG 20 7.020644E-4 45.0 1 TTCCGCG 20 7.020644E-4 45.0 1 CATTCTA 25 3.88033E-5 45.0 45 TATGCGG 20 7.020644E-4 45.0 2 ACTTACT 90 0.0 45.0 38 TCTAGCG 35 1.2058445E-7 45.0 1 ACGGGCA 25 3.88033E-5 45.0 5 >>END_MODULE