SRR2934002.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934002.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	302783
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGC	4911	1.6219536763953064	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCG	3574	1.1803833108199602	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTC	2827	0.9336719696944675	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAGGACTCT	1776	0.5865586905473558	No Hit
GCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC	1420	0.46898273681151187	TruSeq Adapter, Index 13 (95% over 23bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAGGACTCTCGTA	1109	0.3662689120591314	No Hit
CCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC	866	0.2860134155484291	TruSeq Adapter, Index 13 (95% over 23bp)
GAACTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCT	795	0.2625642787078535	TruSeq Adapter, Index 8 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTC	781	0.25794050524633155	No Hit
CTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGCT	750	0.24770214972439009	TruSeq Adapter, Index 8 (95% over 24bp)
GAATGACTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCT	652	0.21533573549373644	No Hit
TCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC	521	0.17207042667520964	TruSeq Adapter, Index 13 (95% over 23bp)
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCAGGACTCTCGT	334	0.11031002401059505	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCACGG	35	1.2079727E-7	45.000004	2
CGGGATA	45	3.8198777E-10	45.000004	6
CGGACAA	20	7.0250465E-4	45.0	6
AGCGTCG	20	7.0250465E-4	45.0	18
GATACTA	25	3.8839768E-5	45.0	17
TACCCGA	20	7.0250465E-4	45.0	40
CGAACAC	25	3.8839768E-5	45.0	34
CCGATCG	20	7.0250465E-4	45.0	40
GCGAACA	40	6.7866495E-9	45.0	33
TGGAACG	20	7.0250465E-4	45.0	33
TACGGGA	25	3.8839768E-5	45.0	4
GCCGATC	20	7.0250465E-4	45.0	9
ACGATCG	20	7.0250465E-4	45.0	40
TAACCCG	20	7.0250465E-4	45.0	38
ATGAGCG	20	7.0250465E-4	45.0	15
AACGATC	20	7.0250465E-4	45.0	39
CGAATAC	20	7.0250465E-4	45.0	45
TACTCAC	40	6.7866495E-9	45.0	30
CGTAAGA	20	7.0250465E-4	45.0	38
CGATGCG	20	7.0250465E-4	45.0	10