SRR2933999.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933999.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	229488
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	1653	0.7202991006065677	No Hit
CTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT	1158	0.5046015477933488	No Hit
TCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	1025	0.44664644774454443	No Hit
GCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	751	0.3272502265913686	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCC	285	0.12418950010458063	No Hit
TTTTTTTGGGGAACTTAAAACAAAAATATAATTATTCATTATTTCTACACA	272	0.11852471588928398	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	267	0.11634595272955449	No Hit
CGCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTG	249	0.10850240535452835	No Hit
TTTATTGGGGGAAAAGATCTTTTTGTTAACAATTTTGTTGATGCTTACATT	244	0.10632364219479887	No Hit
TTCCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCT	243	0.10588788956285296	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	20	7.0214743E-4	45.000004	1
CGGCGCA	20	7.0214743E-4	45.000004	22
GATACAA	25	3.8810173E-5	45.000004	9
TCTTGCG	50	2.1827873E-11	45.000004	1
ACCGGCG	20	7.0214743E-4	45.000004	20
CTCGTTT	20	7.0214743E-4	45.000004	18
CACGGGT	20	7.0214743E-4	45.000004	39
ATGGCAC	20	7.0214743E-4	45.000004	21
CCGGCGC	20	7.0214743E-4	45.000004	21
CGGTTGG	20	7.0214743E-4	45.000004	2
CGCGCAT	25	3.8810173E-5	45.000004	36
GTTAGCG	20	7.0214743E-4	45.000004	1
CCTTTCG	20	7.0214743E-4	45.000004	1
AACGCCA	20	7.0214743E-4	45.000004	36
GGAACGA	20	7.0214743E-4	45.000004	8
CGGTGGA	20	7.0214743E-4	45.000004	16
GAACGGC	20	7.0214743E-4	45.000004	39
CGATGAA	20	7.0214743E-4	45.000004	19
GGACCTA	20	7.0214743E-4	45.000004	8
CACACCG	20	7.0214743E-4	45.000004	17