SRR2933997.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933997.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	548485
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGC	3157	0.5755854763576032	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCG	2669	0.486613125244993	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTC	1781	0.32471261748270236	No Hit
GCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	1235	0.2251656836558885	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAATCACGT	1186	0.21623198446630265	No Hit
CTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT	1059	0.19307729473002908	No Hit
CCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	1003	0.18286735279907382	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	703	0.12817123531181346	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAATCACGTCGTA	662	0.1206960992552212	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAC	80	0.0	45.0	6
GAATCGC	20	7.030059E-4	45.0	18
TAACGCA	25	3.88813E-5	45.0	16
AGTATCG	25	3.88813E-5	45.0	31
TACGCGG	40	6.8030204E-9	45.0	2
CGTACTA	20	7.030059E-4	45.0	34
CGTACCC	20	7.030059E-4	45.0	30
TTACGCG	20	7.030059E-4	45.0	1
TAGTCGA	20	7.030059E-4	45.0	41
AATCGTC	20	7.030059E-4	45.0	33
AATCGCG	20	7.030059E-4	45.0	19
TCGTTCG	30	2.1634187E-6	44.999996	1
CATCGGT	30	2.1634187E-6	44.999996	27
ACCGTCG	30	2.1634187E-6	44.999996	15
ACACGCG	300	0.0	41.25	36
TTTGTCG	205	0.0	40.609756	1
GTTTGCG	145	0.0	40.34483	1
TACGGCT	495	0.0	40.0	7
CGATGAA	540	0.0	40.0	19
CCGATGA	550	0.0	39.68182	18