##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933996.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 670821 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.070501668850557 31.0 30.0 31.0 26.0 34.0 2 30.388614846583515 31.0 30.0 33.0 27.0 34.0 3 30.41394947385368 31.0 30.0 34.0 26.0 34.0 4 34.0912210559896 35.0 33.0 37.0 30.0 37.0 5 34.48329882338209 35.0 35.0 37.0 32.0 37.0 6 34.0202542854204 35.0 35.0 37.0 30.0 37.0 7 34.50058361321425 35.0 35.0 37.0 32.0 37.0 8 34.659542560534035 35.0 35.0 37.0 32.0 37.0 9 35.9810873541526 37.0 35.0 39.0 31.0 39.0 10 35.38071258949854 37.0 34.0 39.0 30.0 39.0 11 35.49663173931645 37.0 35.0 39.0 30.0 39.0 12 35.44727878226829 37.0 35.0 39.0 30.0 39.0 13 35.41361406396043 37.0 35.0 39.0 30.0 39.0 14 35.94554434044253 38.0 34.0 40.0 27.0 41.0 15 36.235029911108924 38.0 35.0 40.0 30.0 41.0 16 36.39944784078018 38.0 35.0 40.0 30.0 41.0 17 36.22816966075898 38.0 35.0 40.0 30.0 41.0 18 36.33523100797381 38.0 35.0 40.0 30.0 41.0 19 36.34357004327533 38.0 35.0 40.0 30.0 41.0 20 36.37510751750467 38.0 35.0 40.0 30.0 41.0 21 36.062369842327534 38.0 34.0 40.0 30.0 41.0 22 36.28451106927183 38.0 34.0 40.0 30.0 41.0 23 36.400582271574685 38.0 35.0 40.0 30.0 41.0 24 36.30341178943414 38.0 35.0 40.0 30.0 41.0 25 35.84354097441791 38.0 34.0 40.0 29.0 41.0 26 35.95754456106771 38.0 34.0 40.0 30.0 41.0 27 36.0119972392039 38.0 34.0 40.0 30.0 41.0 28 35.920804506716394 38.0 34.0 40.0 30.0 41.0 29 36.01507555666862 38.0 34.0 40.0 30.0 41.0 30 35.55571754611141 38.0 34.0 40.0 29.0 41.0 31 35.677033068434056 38.0 34.0 40.0 29.0 41.0 32 35.752385509696325 38.0 34.0 40.0 29.0 41.0 33 35.77971023566644 38.0 34.0 40.0 29.0 41.0 34 35.7174864829813 38.0 34.0 40.0 29.0 41.0 35 35.71684696811817 38.0 34.0 40.0 29.0 41.0 36 35.507916418836025 38.0 34.0 40.0 29.0 41.0 37 35.55617221285559 38.0 34.0 40.0 29.0 41.0 38 35.45833538306046 38.0 34.0 40.0 29.0 41.0 39 35.415098811754554 38.0 34.0 40.0 28.0 41.0 40 35.29524567656647 37.0 34.0 40.0 28.0 41.0 41 35.15618473482494 37.0 34.0 40.0 27.0 41.0 42 35.40216391556019 37.0 34.0 40.0 28.0 41.0 43 35.41732593344573 37.0 34.0 40.0 29.0 41.0 44 35.39079128411305 37.0 34.0 40.0 29.0 41.0 45 35.48324813922045 37.0 34.0 40.0 29.0 41.0 46 35.37305033682607 37.0 34.0 40.0 29.0 41.0 47 35.30496361920691 37.0 34.0 40.0 29.0 41.0 48 35.27558171255819 37.0 34.0 40.0 29.0 41.0 49 35.282119969410616 37.0 34.0 40.0 28.0 41.0 50 35.10819577800933 37.0 34.0 40.0 28.0 41.0 51 33.97714740593989 36.0 32.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 9.0 11 8.0 12 8.0 13 26.0 14 24.0 15 34.0 16 71.0 17 135.0 18 297.0 19 473.0 20 864.0 21 1355.0 22 2065.0 23 2870.0 24 4046.0 25 5696.0 26 7546.0 27 9584.0 28 12233.0 29 15904.0 30 20526.0 31 27102.0 32 34597.0 33 46420.0 34 62830.0 35 64623.0 36 79402.0 37 101061.0 38 117418.0 39 53591.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.55468746506147 4.259258431086684 53.8064550751989 17.379599028652947 2 20.344920627112153 4.519834650376181 54.05570189364972 21.079542828861946 3 22.099487046469925 4.5155115895298445 52.08215008176548 21.302851282234755 4 20.51575606607426 4.777876661583344 47.25030969513477 27.45605757720763 5 18.64923727790275 5.54931941605883 50.314465408805034 25.48697789723339 6 22.493630938804838 6.755751534313922 52.055019148178125 18.695598378703114 7 83.04122858407833 2.3857333029228363 10.07973811195535 4.493300001043497 8 84.36408520305714 3.187735625450008 7.192678821921199 5.255500349571644 9 78.53600289794149 5.125659453117896 9.859112937728545 6.479224711212082 10 42.398195643845376 23.34810627574271 17.561614797390064 16.692083283021848 11 30.71877594768202 24.656801143673203 24.76025646185793 19.86416644678685 12 26.93833377309297 21.537936349637235 31.398241855875114 20.12548802139468 13 24.96284403738106 22.032703209947215 32.34111633356738 20.66333641910435 14 19.885483608891192 24.705845523619566 33.8106588791943 21.598011988294942 15 18.92621131419559 23.895495221527057 36.171944527675784 21.00634893660157 16 22.483494106475497 23.528333191715824 31.112174484698603 22.875998217110077 17 22.961565007654798 23.554569698921174 29.26503493480377 24.21883035862026 18 23.507612313866144 22.456214101824482 31.11783918511794 22.91833439919144 19 25.110275319347487 24.00193196098512 28.344073903470523 22.54371881619687 20 25.09208864958014 27.39300051727659 28.63371898017504 18.88119185296823 21 25.616967864750805 25.62278163623381 29.101503977961336 19.658746521054052 22 22.899253303042094 23.909209759384396 29.75055938916641 23.4409775484071 23 22.134816888558944 24.51637620169911 29.505486560498255 23.843320349243687 24 22.633608667587925 24.930644687629037 28.6769495886384 23.758797056144633 25 22.615720139947914 25.465660735129042 27.4099946185346 24.50862450638844 26 20.477892015902903 25.5591282920481 28.5155056266873 25.447474065361696 27 20.316149911824468 25.889767911260975 30.30063161409676 23.4934505628178 28 18.28654738000152 25.88261250020497 31.364551795486427 24.46628832430708 29 20.504873878426586 26.030043782171397 29.870263453290818 23.5948188861112 30 23.209917399723622 25.291098519575268 29.988774948905895 21.510209131795218 31 23.297123971968677 27.078013359748727 27.843046058486543 21.781816609796056 32 23.75298328466163 27.85348103294322 26.537779825020387 21.85575585737477 33 24.087349680466176 26.311489950374245 25.676745361281178 23.924415007878405 34 21.158848634732664 25.57433354054211 30.126814753861314 23.140003070863912 35 20.98682062726122 27.79444889173118 27.60766284895673 23.611067632050876 36 22.986012662096147 27.74182680625681 27.396131009613594 21.87602952203345 37 21.267968653336734 29.049627247805297 28.36896877110287 21.313435327755094 38 22.326075063243398 28.643110457186044 26.522574576526374 22.50823990304418 39 23.123605253860568 25.371149680764315 27.147480475417435 24.35776458995768 40 25.31480081869828 24.48104635961009 27.88776737758657 22.31638544410506 41 20.860706507399144 25.88127086063197 27.01853400534569 26.2394886266232 42 20.167078848157704 26.117697567607458 28.52787852497164 25.1873450592632 43 20.758443757723743 24.454362639213738 29.30111013221113 25.48608347085139 44 21.01544227148524 24.558563312716807 28.97091772618925 25.455076689608703 45 21.70579036732601 23.940961895945417 27.776709435154835 26.576538301573745 46 22.343367306628743 24.940483377831047 29.331073416008145 23.385075899532065 47 19.183209827957086 26.630502026621112 31.1628586463453 23.023429499076506 48 19.59583853218668 27.056994339771713 29.39159626785685 23.955570860184757 49 22.128704974948608 24.40039891416637 30.686427526866332 22.78446858401869 50 21.599949912122607 24.27264501260396 28.70646565924442 25.420939416029015 51 20.53602973073294 24.50832636426111 26.755423577973858 28.2002203270321 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 152.0 1 380.0 2 608.0 3 1127.0 4 1646.0 5 1263.5 6 881.0 7 949.5 8 1018.0 9 1079.0 10 1140.0 11 1213.5 12 1287.0 13 1345.0 14 1403.0 15 1344.5 16 1286.0 17 1392.0 18 1498.0 19 1613.5 20 1729.0 21 1995.5 22 2262.0 23 2989.5 24 3717.0 25 3837.5 26 4944.0 27 5930.0 28 6759.5 29 7589.0 30 9196.5 31 10804.0 32 12399.5 33 13995.0 34 15832.0 35 17669.0 36 18601.0 37 19533.0 38 23069.5 39 26606.0 40 29932.0 41 33258.0 42 37544.5 43 41831.0 44 49793.5 45 57756.0 46 62902.5 47 68049.0 48 68655.5 49 69262.0 50 61019.5 51 52777.0 52 46977.0 53 41177.0 54 38441.5 55 35706.0 56 34306.5 57 32907.0 58 31090.0 59 29273.0 60 26919.0 61 24565.0 62 21268.0 63 17971.0 64 16161.0 65 14351.0 66 12014.5 67 9678.0 68 7960.5 69 6243.0 70 5261.0 71 4279.0 72 3618.5 73 2958.0 74 2491.0 75 1492.5 76 961.0 77 779.0 78 597.0 79 450.0 80 303.0 81 229.5 82 156.0 83 88.0 84 20.0 85 12.0 86 4.0 87 3.0 88 2.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 670821.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.35689284041823 #Duplication Level Percentage of deduplicated Percentage of total 1 72.31924528561609 26.293030511490656 2 10.782583597900944 7.840424728234717 3 3.9505738858377453 4.3089177427667265 4 2.0225595251438824 2.9413591967609323 5 1.2704107121028354 2.3094093061621104 6 0.9900470769250417 2.159702128963983 7 0.8372795916045795 2.1308619072605786 8 0.7612026849769862 2.2139971558037534 9 0.6753187523284164 2.2097242360376255 >10 6.242298692136588 39.74979674990876 >50 0.09981861884766662 2.4641553876278652 >100 0.0440865565589424 2.946220145346378 >500 0.0020795545546670943 0.5576709041283845 >1k 0.002495465465600513 1.8747298995075137 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC 3625 0.5403826057920071 TruSeq Adapter, Index 15 (95% over 21bp) CTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT 2269 0.33824224345987974 TruSeq Adapter, Index 21 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC 2028 0.30231611711619044 TruSeq Adapter, Index 15 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC 1797 0.26788070140916875 TruSeq Adapter, Index 15 (95% over 21bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGC 1445 0.21540768699846902 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCG 1234 0.18395369256478256 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCC 861 0.12835018581708085 No Hit GAATCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTC 859 0.12805204368974732 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 854 0.12730668837141354 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3676092430022316 0.0 2 0.0 0.0 0.0 1.5996815842080079 0.0 3 0.0 0.0 0.0 2.0325839530962804 0.0 4 0.0 0.0 0.0 2.748870414015065 0.0 5 0.0 0.0 0.0 3.948892476532488 0.0 6 0.0 0.0 0.0 4.600631166883565 0.0 7 0.0 0.0 0.0 5.271152811256655 0.0 8 0.0 0.0 0.0 6.2577051106032755 0.0 9 0.0 0.0 0.0 6.701638738202889 0.0 10 0.0 0.0 0.0 7.7566146557725535 0.0 11 0.0 0.0 0.0 9.467801395603297 0.0 12 0.0 0.0 0.0 11.160652394603032 0.0 13 0.0 0.0 0.0 11.707146914005376 0.0 14 0.0 0.0 0.0 11.902131865281499 0.0 15 0.0 0.0 0.0 12.235603834704042 0.0 16 0.0 0.0 0.0 12.9094050424778 0.0 17 0.0 0.0 0.0 13.837372413803385 0.0 18 0.0 0.0 0.0 14.90978964582206 0.0 19 0.0 0.0 0.0 15.714326176431566 0.0 20 0.0 0.0 0.0 16.536453092553753 0.0 21 0.0 0.0 0.0 17.577267259075075 0.0 22 0.0 0.0 0.0 18.68739947020144 0.0 23 0.0 0.0 0.0 19.70391505334508 0.0 24 0.0 0.0 0.0 20.526191040530932 0.0 25 0.0 0.0 0.0 21.281534120130406 0.0 26 0.0 0.0 0.0 21.9058437347668 0.0 27 0.0 0.0 0.0 22.579794013604225 0.0 28 0.0 0.0 0.0 23.275061454545998 0.0 29 0.0 0.0 0.0 24.04203207711148 0.0 30 0.0 0.0 0.0 24.896358342985685 0.0 31 0.0 0.0 0.0 25.61905485964214 0.0 32 0.0 0.0 0.0 26.341304163107594 0.0 33 1.4907106366676058E-4 0.0 0.0 27.07458472528439 0.0 34 1.4907106366676058E-4 0.0 0.0 27.837381358067205 0.0 35 1.4907106366676058E-4 0.0 0.0 28.65667592397972 0.0 36 1.4907106366676058E-4 0.0 0.0 29.40859036911486 0.0 37 1.4907106366676058E-4 0.0 0.0 30.148728200220326 0.0 38 1.4907106366676058E-4 0.0 0.0 31.012445943105536 0.0 39 1.4907106366676058E-4 0.0 0.0 32.200840462656956 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGATT 35 1.2109194E-7 45.000004 27 TCACGGG 25 3.8890634E-5 45.0 3 AATGCGA 20 7.0311833E-4 45.0 25 CCGTAAG 20 7.0311833E-4 45.0 25 CGAGACT 25 3.8890634E-5 45.0 26 CCGTTTG 45 3.8380676E-10 45.0 1 AATCGGG 40 6.8084773E-9 45.0 21 GTACGGA 20 7.0311833E-4 45.0 29 GGTCGAT 30 2.1641463E-6 44.999996 26 CGGTTAT 30 2.1641463E-6 44.999996 4 CGTTCAT 90 0.0 42.5 17 GCCGATG 50 1.0804797E-9 40.5 9 CGCAATC 50 1.0804797E-9 40.5 18 ACGGGAC 40 3.4553523E-7 39.375 5 GTTCGGT 80 0.0 39.375 9 TATCGTG 40 3.4553523E-7 39.375 1 CCTTGCG 75 0.0 39.000004 1 ACACGCG 185 0.0 38.918922 36 TTGTTCG 145 0.0 38.793106 1 TTGGGAC 990 0.0 38.409092 5 >>END_MODULE