SRR2933995.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933995.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	177241
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGC	2245	1.2666369519467844	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCG	1707	0.963095446313212	No Hit
CCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	1542	0.8700018618716889	No Hit
GAATCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTC	1179	0.665195976100338	No Hit
CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT	1115	0.6290869494078684	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	1004	0.5664603562381165	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCACGGTGTT	879	0.4959349134793868	No Hit
TCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	652	0.3678607094295338	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTA	490	0.27645973561422016	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTC	331	0.18675137242511608	No Hit
GAACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCT	307	0.17321048741543998	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCT	278	0.1568485846954147	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCC	242	0.1365372571809006	No Hit
CGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTG	235	0.13258783238641172	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	228	0.12863840759192285	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGAGT	30	2.1550823E-6	45.000004	10
GCTTGCG	30	2.1550823E-6	45.000004	1
TGGTTGA	30	2.1550823E-6	45.000004	14
CCTCACC	30	2.1550823E-6	45.000004	30
TTACGGG	60	0.0	45.000004	3
TTGTGCG	25	3.877417E-5	45.0	1
CCGATCG	20	7.0171274E-4	45.0	40
CGTGCGG	20	7.0171274E-4	45.0	2
TTAGCGG	25	3.877417E-5	45.0	2
GGCACGA	25	3.877417E-5	45.0	8
TTTGTCG	55	1.8189894E-12	45.0	1
TTTCGAG	20	7.0171274E-4	45.0	1
GCACGAT	25	3.877417E-5	45.0	9
CACGATC	25	3.877417E-5	45.0	10
ATATGGC	25	3.877417E-5	45.0	23
TGCGGGC	45	3.8016879E-10	45.0	4
CGGGCTC	20	7.0171274E-4	45.0	6
GTACTTA	20	7.0171274E-4	45.0	19
TACTCAC	25	3.877417E-5	45.0	30
CGCACTT	20	7.0171274E-4	45.0	35