SRR2933994.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933994.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1075013
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGC	2927	0.272275777130137	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCG	2596	0.24148545180383865	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTC	2335	0.21720667564020155	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2188	0.20353242239861286	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	1970	0.1832535978634677	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	1923	0.17888155771139513	No Hit
CTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGCT	1786	0.166137525778758	No Hit
TCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	1463	0.13609137749962094	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGTACAGT	1114	0.10362665381720966	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCGTAA	40	6.8139343E-9	45.0	30
GCGTACG	20	7.0330827E-4	45.0	1
TCCCGTA	45	1.9281288E-8	40.0	29
CCGATGA	445	0.0	39.94382	18
GCGTTAG	40	3.4579352E-7	39.375	1
ACACGCG	790	0.0	39.303795	36
GATCGTA	35	6.247912E-6	38.571426	9
CACGCGG	820	0.0	38.140244	37
CGTTTTT	1310	0.0	38.129772	1
TGGGCGA	1570	0.0	38.121017	6
TTTGGGC	2345	0.0	38.091686	4
CCGTTTG	130	0.0	38.07692	1
TCGTTTG	445	0.0	37.92135	1
TTACACG	840	0.0	37.76786	34
TACACGC	840	0.0	37.500004	35
CGCGGAT	30	1.139873E-4	37.499996	23
CGTCGTT	30	1.139873E-4	37.499996	11
TACCGGT	60	1.546141E-10	37.499996	40
TTCGGGC	505	0.0	37.425743	4
CTTGGGA	2830	0.0	37.287987	4