SRR2933993.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933993.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	755555
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGC	6934	0.9177359689235066	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTC	6363	0.8421623839429293	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCG	5999	0.7939858779307927	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTATTCAT	3246	0.4296179629543846	No Hit
GCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	2076	0.2747649079153735	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTT	1876	0.24829430021639723	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCT	1645	0.21772074832407964	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTC	1556	0.2059413278980352	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTATTCATCGTA	1464	0.19376484835650615	No Hit
CCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	1360	0.1800001323530385	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1316	0.17417659865926371	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCT	1288	0.17047071358140706	No Hit
CTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT	1108	0.14664716665232844	No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCCATCGAATGC	770	0.10191183964105856	No Hit
TCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	766	0.10138242748707904	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAG	25	3.889533E-5	45.0	1
CGAATCT	25	3.889533E-5	45.0	21
CGGTGAT	25	3.889533E-5	45.0	31
CCGCGTA	25	3.889533E-5	45.0	40
CGATCGA	40	6.8102963E-9	45.0	41
CGCTCGA	85	0.0	42.352943	41
TTTCGCG	240	0.0	42.187496	1
CCGATGA	2325	0.0	41.806454	18
CGATGAA	2345	0.0	41.449894	19
CATCGAA	350	0.0	41.142857	42
GATGAAT	2600	0.0	41.105766	20
CCCATCG	345	0.0	41.086956	40
TCGAATG	275	0.0	40.909092	44
ATCGAAT	330	0.0	40.90909	43
CGTTTTT	1105	0.0	40.723984	1
CGTAAGC	100	0.0	40.5	43
CCGATCG	45	1.9268555E-8	40.0	40
GCTACGA	45	1.9268555E-8	40.0	10
CGATAAA	130	0.0	39.80769	19
TACGGCT	970	0.0	39.43299	7