SRR2933992.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933992.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2042027
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGC	6828	0.3343736395258241	No Hit
CTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGCT	6258	0.3064601986163748	No Hit
GCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGC	6134	0.30038780094484546	No Hit
TCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGC	4470	0.21890014186883916	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	4100	0.20078089075217911	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3436	0.16826418064011886	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	3128	0.15318112835922346	No Hit
TCCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTG	2149	0.10523856932352021	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATCG	20	7.0345757E-4	45.0	9
TTTGTCG	665	0.0	39.924812	1
CGAACGA	85	0.0	39.705883	22
ATTCCGA	85	0.0	39.705883	12
CGTCGAC	40	3.4599907E-7	39.375	16
TTTGGGA	12575	0.0	39.023857	4
TTTCGCG	615	0.0	38.78049	1
CGTTTTT	1900	0.0	38.605263	1
TATTCCG	35	6.2506733E-6	38.571426	1
TTGGGAC	4975	0.0	38.44221	5
TCGTTTG	700	0.0	38.25	1
CGTTTGG	1400	0.0	38.25	2
CCATACG	265	0.0	38.207546	2
TTGGGAT	6110	0.0	37.929623	5
TACGGGA	345	0.0	37.826088	4
TTCTTCG	555	0.0	37.7027	1
TGGGCGA	1985	0.0	37.518894	6
TCCGATA	90	0.0	37.5	14
CCGATAA	90	0.0	37.5	15
TGCGACG	30	1.1402325E-4	37.499996	1