##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933991.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 933290 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.40638065338748 33.0 31.0 34.0 31.0 34.0 2 32.627080543025215 34.0 31.0 34.0 31.0 34.0 3 32.69701807583924 34.0 31.0 34.0 31.0 34.0 4 36.07375199562837 37.0 35.0 37.0 35.0 37.0 5 36.098198844946374 37.0 35.0 37.0 35.0 37.0 6 35.64851653826785 37.0 35.0 37.0 35.0 37.0 7 36.03203720172722 37.0 35.0 37.0 35.0 37.0 8 36.0057666963109 37.0 35.0 37.0 35.0 37.0 9 37.87807005325247 39.0 38.0 39.0 35.0 39.0 10 37.57636747420416 39.0 37.0 39.0 35.0 39.0 11 37.57670391839621 39.0 37.0 39.0 35.0 39.0 12 37.36335544150264 39.0 37.0 39.0 35.0 39.0 13 37.26571269380364 39.0 37.0 39.0 34.0 39.0 14 38.48816230753571 40.0 38.0 41.0 34.0 41.0 15 38.52173922360681 40.0 38.0 41.0 34.0 41.0 16 38.61523963612596 40.0 38.0 41.0 35.0 41.0 17 38.54848332243997 40.0 38.0 41.0 34.0 41.0 18 38.50348230453557 40.0 38.0 41.0 34.0 41.0 19 38.536991717472596 40.0 38.0 41.0 34.0 41.0 20 38.46486194001864 40.0 38.0 41.0 34.0 41.0 21 38.412748449035135 40.0 37.0 41.0 34.0 41.0 22 38.392171779404045 40.0 37.0 41.0 34.0 41.0 23 38.34007864650859 40.0 37.0 41.0 34.0 41.0 24 38.31138660009215 40.0 37.0 41.0 34.0 41.0 25 38.236710990153114 40.0 37.0 41.0 34.0 41.0 26 38.15434216588627 40.0 37.0 41.0 34.0 41.0 27 38.086910820859536 40.0 37.0 41.0 34.0 41.0 28 38.01503176933215 40.0 37.0 41.0 34.0 41.0 29 37.988542682338824 40.0 37.0 41.0 34.0 41.0 30 37.91216985074307 40.0 36.0 41.0 34.0 41.0 31 37.87742930921793 40.0 36.0 41.0 34.0 41.0 32 37.78783336369189 40.0 36.0 41.0 33.0 41.0 33 37.72836953144253 40.0 36.0 41.0 33.0 41.0 34 37.71720472736234 40.0 36.0 41.0 33.0 41.0 35 37.61401922232103 40.0 36.0 41.0 33.0 41.0 36 37.50337944261698 40.0 36.0 41.0 33.0 41.0 37 37.3868508180737 40.0 36.0 41.0 33.0 41.0 38 37.39279752274213 40.0 35.0 41.0 33.0 41.0 39 37.39985106451371 40.0 35.0 41.0 33.0 41.0 40 37.34336165607689 40.0 35.0 41.0 33.0 41.0 41 37.2267290981367 39.0 35.0 41.0 32.0 41.0 42 37.20054752542082 39.0 35.0 41.0 32.0 41.0 43 37.04564819080886 39.0 35.0 41.0 32.0 41.0 44 36.96279612982031 39.0 35.0 41.0 32.0 41.0 45 36.98917056863355 39.0 35.0 41.0 32.0 41.0 46 36.894757256586914 39.0 35.0 41.0 32.0 41.0 47 36.788266240932614 39.0 35.0 41.0 31.0 41.0 48 36.729366006278866 39.0 35.0 41.0 31.0 41.0 49 36.73886359009526 39.0 35.0 41.0 31.0 41.0 50 36.65930739641483 39.0 35.0 41.0 31.0 41.0 51 35.728674902763345 38.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 13.0 10 17.0 11 14.0 12 10.0 13 10.0 14 13.0 15 26.0 16 39.0 17 81.0 18 129.0 19 238.0 20 465.0 21 794.0 22 1229.0 23 1750.0 24 2487.0 25 3451.0 26 4706.0 27 6126.0 28 7200.0 29 8721.0 30 11509.0 31 14826.0 32 19142.0 33 27706.0 34 51436.0 35 71156.0 36 65839.0 37 102989.0 38 200511.0 39 330403.0 40 250.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.868476036387406 4.270483986756528 53.33754781471997 17.523492162136098 2 17.948976202466543 7.648855125416537 53.02564047616497 21.376528195951956 3 19.693771496533767 7.4555604367345625 50.942579476904285 21.908088589827386 4 18.57396950572705 4.689003418015837 52.83138145699622 23.90564561926089 5 20.558133056177606 6.103569094279377 48.57525527970942 24.763042569833598 6 21.82569190712426 8.371460103504806 51.08647901509713 18.716368974273806 7 81.32531153232114 2.2236389546657525 11.554607892509296 4.8964416205038095 8 81.25577258944165 5.088343387371556 7.894009364720504 5.761874658466286 9 75.64326200859325 5.543935968455678 10.041359063099359 8.771442959851708 10 34.68900341801584 34.36038101769011 16.662880776607487 14.28773478768657 11 29.895102272605513 24.6773243043427 25.35685585402179 20.07071756902999 12 27.890902077596458 21.20423448231525 29.45547471846907 21.44938872161922 13 24.971230807144618 24.106547804005185 30.660137792111776 20.26208359673842 14 19.689807026754814 26.3900823966827 29.108101447567208 24.812009128995275 15 17.022468900341803 26.152964244768505 34.81061620718105 22.013950647708644 16 20.417340805108807 25.86034351594895 30.080682317393308 23.641633361548926 17 19.73663062927922 25.847485776125318 29.594874047723646 24.82100954687182 18 20.08550396982717 25.47386128641687 30.768678545789623 23.671956197966335 19 21.344383846392866 26.84996089104137 28.56507623568237 23.24057902688339 20 24.749327647355056 25.992563940468667 30.926293006461016 18.331815405715265 21 25.256672631229304 27.747109687235476 27.86186501516142 19.134352666373797 22 22.287284766792745 24.21905302746199 28.361495355141486 25.132166850603777 23 21.657684106762098 25.852200280727324 28.189737380664106 24.30037823184648 24 22.730448199380685 23.730458914163872 29.36011314811045 24.178979738344992 25 21.09955105058449 27.69653591059585 26.66984538567862 24.53406765314104 26 21.51603467303839 27.09607946083211 27.371877980049074 24.016007886080427 27 21.28234525174383 26.936857782682765 29.07949297645962 22.70130398911378 28 20.22683196005529 25.446645737123507 31.75561722508545 22.570905077735752 29 21.344919585552187 23.588273741280847 30.99101029690664 24.075796376260328 30 21.370849360863183 25.422858918449787 31.763224721147772 21.443066999539266 31 23.06303506948537 25.676584984302842 27.59163818320136 23.668741763010427 32 24.193230399982856 25.474075582080598 28.563361870372557 21.769332147563993 33 22.305928489537013 23.722315678942238 29.747666855961167 24.224088975559578 34 22.474257733394765 23.16128963130431 29.483118859089885 24.881333776211036 35 22.62576476764993 22.433434409454726 30.2697982406326 24.671002582262748 36 24.329200998617793 24.131834692325 29.633768710690138 21.905195598367065 37 21.103194076867855 25.21895659441331 32.5256886926893 21.152160636029528 38 22.183779961212487 24.767435630940007 30.256083318154058 22.792701089693452 39 20.97558100911828 23.255794019008025 32.92417147939011 22.84445349248358 40 23.054998982095597 22.208959701700437 31.695507291409957 23.040534024794006 41 20.40726890891363 23.055534721254915 29.3184326415155 27.21876372831596 42 23.17007575351713 22.24228267741002 30.077360734605534 24.510280834467316 43 22.717269016061458 21.63679027954869 31.47789004489494 24.168050659494906 44 21.052298856732634 22.00109290788501 31.312882383824963 25.633725851557394 45 21.933161182483474 21.384457135509862 28.986702954065724 27.695678727940944 46 23.450160186008638 23.177790397411307 30.052931028940627 23.319118387639428 47 19.440795465503754 21.932411147660428 34.76850710925864 23.85828627757717 48 20.68124591498891 21.58053766782029 32.84241768367817 24.895798733512628 49 21.5790375981742 20.37512455935454 34.803008711118736 23.242829131352526 50 21.7280802322965 20.61577858972024 32.132349001917945 25.523792176065317 51 20.00889327004468 19.96774850260905 29.99592838238918 30.027429844957087 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 139.0 1 644.5 2 1150.0 3 2027.5 4 2905.0 5 2100.5 6 1296.0 7 1271.5 8 1247.0 9 1347.0 10 1447.0 11 1449.0 12 1451.0 13 1414.5 14 1378.0 15 1377.0 16 1376.0 17 1317.5 18 1259.0 19 1514.5 20 1770.0 21 2014.0 22 2258.0 23 2832.5 24 3407.0 25 3948.0 26 6445.5 27 8402.0 28 10525.5 29 12649.0 30 14332.0 31 16015.0 32 18287.0 33 20559.0 34 22595.0 35 24631.0 36 27332.5 37 30034.0 38 33143.5 39 36253.0 40 40687.0 41 45121.0 42 50311.0 43 55501.0 44 62518.0 45 69535.0 46 87317.0 47 105099.0 48 106486.5 49 107874.0 50 103266.0 51 98658.0 52 81431.0 53 64204.0 54 55967.5 55 47731.0 56 43028.5 57 38326.0 58 34493.0 59 30660.0 60 29899.5 61 29139.0 62 25788.5 63 22438.0 64 19168.5 65 15899.0 66 13567.0 67 11235.0 68 8757.0 69 6279.0 70 5471.5 71 4664.0 72 3856.0 73 3048.0 74 2420.5 75 1425.5 76 1058.0 77 762.0 78 466.0 79 361.5 80 257.0 81 186.0 82 115.0 83 71.0 84 27.0 85 16.5 86 6.0 87 6.0 88 6.0 89 19.0 90 32.0 91 17.0 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 933290.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.349808644693457 #Duplication Level Percentage of deduplicated Percentage of total 1 67.13199991106734 17.689153515922023 2 13.250487152266215 6.9829560182236765 3 5.568559900438686 4.4019146340921775 4 2.9352895446475626 3.0937727127293058 5 1.7019694477428817 2.2423284633569764 6 1.1019636828022192 1.7421919305144091 7 0.7233212006292923 1.3341562657662243 8 0.5232942555203994 1.1030962798263877 9 0.42344577465506583 1.0041943620208473 >10 5.8728068013528585 39.926061304397486 >50 0.6781412465863058 10.85445901329669 >100 0.07886318425883165 3.8210855518213855 >500 0.0032859660107846514 0.582064809451789 >1k 0.004928949016176977 2.6487303982360784 >5k 0.0016429830053923257 2.5738347403445503 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC 7230 0.7746788243739888 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGC 6210 0.665388035873094 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCG 5331 0.5712050916649701 No Hit CTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGCT 5010 0.5368106376367474 Illumina Single End Adapter 1 (95% over 21bp) GAATCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTC 4938 0.5290959937425667 No Hit GCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC 4372 0.46845032090775646 No Hit TCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC 3729 0.39955426501944735 No Hit TCCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTG 1455 0.15590009536157037 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1450 0.15536435620225225 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGTTCGTT 1412 0.1512927385914346 No Hit GAATGACTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCT 1383 0.14818545146738957 No Hit CGCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTG 1301 0.13939932925457255 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTC 1178 0.126220145935347 No Hit GAACTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCT 1142 0.12236282398825658 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTA 1065 0.11411244093475767 No Hit GCCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTG 1048 0.11229092779307612 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.0714783186362224E-4 0.0 0.0 0.5610260476379261 0.0 2 1.0714783186362224E-4 0.0 0.0 2.3321797083436016 0.0 3 1.0714783186362224E-4 0.0 0.0 3.1462889348434033 0.0 4 1.0714783186362224E-4 0.0 0.0 4.033472982674196 0.0 5 1.0714783186362224E-4 0.0 0.0 5.867093829356363 0.0 6 1.0714783186362224E-4 0.0 0.0 6.623450374481672 0.0 7 1.0714783186362224E-4 0.0 0.0 7.474739898638151 0.0 8 1.0714783186362224E-4 0.0 0.0 8.652616014314951 0.0 9 1.0714783186362224E-4 0.0 0.0 9.113137395664799 0.0 10 1.0714783186362224E-4 0.0 0.0 10.735034126584448 0.0 11 1.0714783186362224E-4 0.0 0.0 12.530081753795711 0.0 12 1.0714783186362224E-4 0.0 0.0 14.96212324143621 0.0 13 1.0714783186362224E-4 0.0 0.0 15.58036623128931 0.0 14 1.0714783186362224E-4 0.0 0.0 15.820484522495688 0.0 15 1.0714783186362224E-4 0.0 0.0 16.305435609510443 0.0 16 1.0714783186362224E-4 0.0 0.0 17.08365031233593 0.0 17 1.0714783186362224E-4 0.0 0.0 18.095768732119705 0.0 18 1.0714783186362224E-4 0.0 0.0 19.15374642394111 0.0 19 1.0714783186362224E-4 0.0 0.0 20.076717847614354 0.0 20 2.1429566372724448E-4 0.0 0.0 20.95715158203774 0.0 21 2.1429566372724448E-4 0.0 0.0 22.09281145196027 0.0 22 2.1429566372724448E-4 0.0 0.0 23.333797640604743 0.0 23 2.1429566372724448E-4 0.0 0.0 24.420705247029325 0.0 24 2.1429566372724448E-4 0.0 0.0 25.27424487565494 0.0 25 3.214434955908667E-4 0.0 0.0 26.0487094043652 0.0 26 3.214434955908667E-4 0.0 0.0 26.728455249708023 0.0 27 3.214434955908667E-4 0.0 0.0 27.389557372306573 0.0 28 3.214434955908667E-4 0.0 0.0 28.070803287295483 0.0 29 3.214434955908667E-4 0.0 0.0 28.802730126755886 0.0 30 3.214434955908667E-4 0.0 0.0 29.642876276398546 0.0 31 3.214434955908667E-4 0.0 0.0 30.396232682231673 0.0 32 3.214434955908667E-4 0.0 0.0 31.115301781868443 0.0 33 3.214434955908667E-4 0.0 0.0 31.82515616796494 0.0 34 3.214434955908667E-4 0.0 0.0 32.5283673884859 0.0 35 3.214434955908667E-4 0.0 0.0 33.29790311693043 0.0 36 3.214434955908667E-4 0.0 0.0 33.993721137052795 0.0 37 3.214434955908667E-4 0.0 0.0 34.69050348766193 0.0 38 3.214434955908667E-4 0.0 0.0 35.40003643026284 0.0 39 3.214434955908667E-4 0.0 0.0 36.127141617289375 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGATT 20 7.032603E-4 45.000004 9 GTCGATA 20 7.032603E-4 45.000004 43 CCGATCG 20 7.032603E-4 45.000004 40 GAGTACG 20 7.032603E-4 45.000004 32 CGACATA 20 7.032603E-4 45.000004 36 TCGATAT 20 7.032603E-4 45.000004 44 TTGACGT 20 7.032603E-4 45.000004 20 AATTCGC 20 7.032603E-4 45.000004 28 AGTCGAT 20 7.032603E-4 45.000004 42 AGTCGAC 20 7.032603E-4 45.000004 24 CGAAGTA 20 7.032603E-4 45.000004 45 CCGATAA 25 3.89024E-5 45.0 15 TAACGGG 25 3.89024E-5 45.0 3 GAGCGTT 25 3.89024E-5 45.0 9 TTACGAG 25 3.89024E-5 45.0 1 TATAACG 25 3.89024E-5 45.0 13 CGATAAC 25 3.89024E-5 45.0 16 CGATGAA 120 0.0 44.999996 19 TCGTGCG 105 0.0 42.857143 1 TCGACGT 60 3.6379788E-12 41.249996 26 >>END_MODULE