##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933988.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 648072 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.144105901813376 33.0 31.0 34.0 30.0 34.0 2 32.38190818304139 34.0 31.0 34.0 30.0 34.0 3 32.44859676085373 34.0 31.0 34.0 30.0 34.0 4 35.894636707032554 37.0 35.0 37.0 35.0 37.0 5 35.953841548469924 37.0 35.0 37.0 35.0 37.0 6 35.597263884259775 37.0 35.0 37.0 33.0 37.0 7 35.91204680961375 37.0 35.0 37.0 35.0 37.0 8 35.90139675838487 37.0 35.0 37.0 35.0 37.0 9 37.714898961843744 39.0 38.0 39.0 35.0 39.0 10 37.43772914120653 39.0 37.0 39.0 35.0 39.0 11 37.436496253502696 39.0 37.0 39.0 35.0 39.0 12 37.22860577219815 39.0 37.0 39.0 34.0 39.0 13 37.07485279413398 39.0 37.0 39.0 33.0 39.0 14 37.96791714500858 40.0 37.0 41.0 33.0 41.0 15 38.07265396437433 40.0 37.0 41.0 33.0 41.0 16 38.206086669382415 40.0 37.0 41.0 33.0 41.0 17 38.23148971101976 40.0 37.0 41.0 34.0 41.0 18 38.231827636435455 40.0 37.0 41.0 34.0 41.0 19 38.2818544853041 40.0 37.0 41.0 34.0 41.0 20 38.19836684812799 40.0 37.0 41.0 34.0 41.0 21 38.113015220531054 40.0 37.0 41.0 34.0 41.0 22 38.13148693355059 40.0 37.0 41.0 34.0 41.0 23 38.09264094113 40.0 37.0 41.0 34.0 41.0 24 38.04772000641904 40.0 37.0 41.0 34.0 41.0 25 37.91227517930106 40.0 36.0 41.0 34.0 41.0 26 37.83926940216519 40.0 36.0 41.0 34.0 41.0 27 37.81292819316372 40.0 36.0 41.0 34.0 41.0 28 37.66760946314607 39.0 36.0 41.0 33.0 41.0 29 37.56135275092891 39.0 36.0 41.0 33.0 41.0 30 37.48689343159402 39.0 36.0 41.0 33.0 41.0 31 37.415199237121804 39.0 36.0 41.0 33.0 41.0 32 37.36065282869804 39.0 35.0 41.0 33.0 41.0 33 37.36719994074733 39.0 35.0 41.0 33.0 41.0 34 37.38215506918984 39.0 36.0 41.0 33.0 41.0 35 37.3555824044242 39.0 35.0 41.0 33.0 41.0 36 37.24329704106951 39.0 35.0 41.0 32.0 41.0 37 37.107690194916614 39.0 35.0 41.0 32.0 41.0 38 37.01828346233135 39.0 35.0 41.0 32.0 41.0 39 37.00689892481083 39.0 35.0 41.0 32.0 41.0 40 36.96518442395289 39.0 35.0 41.0 31.0 41.0 41 36.96389444382723 39.0 35.0 41.0 32.0 41.0 42 37.002831475515066 39.0 35.0 41.0 31.0 41.0 43 36.86540384401733 39.0 35.0 41.0 31.0 41.0 44 36.66744898714958 39.0 35.0 41.0 31.0 41.0 45 36.706313496031306 39.0 35.0 40.0 31.0 41.0 46 36.63119221321088 39.0 35.0 40.0 31.0 41.0 47 36.552565147082426 39.0 35.0 40.0 31.0 41.0 48 36.559778851732524 39.0 35.0 40.0 31.0 41.0 49 36.611749929020235 39.0 35.0 40.0 31.0 41.0 50 36.567781049019246 39.0 35.0 40.0 31.0 41.0 51 35.58260193311854 38.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 10.0 10 20.0 11 28.0 12 19.0 13 14.0 14 16.0 15 21.0 16 27.0 17 45.0 18 82.0 19 150.0 20 307.0 21 505.0 22 822.0 23 1136.0 24 1808.0 25 2639.0 26 3717.0 27 4554.0 28 5602.0 29 6843.0 30 8831.0 31 11549.0 32 15714.0 33 23290.0 34 42618.0 35 47652.0 36 50944.0 37 81858.0 38 156567.0 39 180640.0 40 42.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.945752941031245 4.750552407757163 53.160914219407715 19.142780431803875 2 20.830864471848805 4.339486970583516 49.70774852176918 25.12190003579849 3 20.690293671073583 4.852392943993877 51.645496179436854 22.811817205495686 4 21.45872680813243 4.7030268241800295 48.52470095915269 25.313545408534853 5 18.52139885691713 5.143101383796862 49.92639706699256 26.40910269229345 6 20.589687565579133 6.089138243898827 52.162105445074005 21.159068745448035 7 72.76552605266082 2.3619289214778605 16.121819797800242 8.750725228061079 8 70.06891209618684 3.0237381031737214 14.948339073436284 11.95901072720315 9 63.072467256724565 6.223999802491082 20.24636151538718 10.457171425397178 10 31.02371341455888 27.962170869903346 25.48451406633831 15.52960164919947 11 25.310767939364766 23.077682726610625 30.549537705687023 21.062011628337594 12 24.10488340801639 19.603840314039182 36.2393376044637 20.051938673480723 13 22.356003653914996 23.61620313792295 35.126035378785076 18.901757829376983 14 16.26516806774556 26.758755200039502 33.87818020219975 23.097896530015184 15 12.803978570282315 26.145860336505823 38.671474774407784 22.378686318804082 16 15.693163722549347 26.823871421693884 31.28680146650372 26.196163389253048 17 16.1141046056611 26.808441037415598 29.356306089446853 27.721148267476455 18 17.434173980668817 23.571300719673122 34.73564665654433 24.25887864311373 19 17.865761828932587 24.584768359071212 32.707785554691455 24.841684257304745 20 19.562023972645015 27.093903146563964 33.23905368539298 20.10501919539804 21 20.558826797022554 26.663241121356883 33.57744201261588 19.200490069004676 22 16.63071387129825 26.141076917379554 30.88021084077078 26.347998370551416 23 18.1580133071634 25.109864336061428 30.12026441506499 26.61185794171018 24 21.93213099779037 23.61867199940747 27.63998444617265 26.809212556629507 25 17.240985569504623 26.865687763088054 25.87181671172339 30.021509955683932 26 15.390882494537644 29.028256119690404 26.690707205372245 28.89015418039971 27 16.24927477193892 26.237053907590514 28.02080633016085 29.49286499030972 28 11.95469021960523 25.999271685862062 28.844171635250405 33.2018664592823 29 13.873304200767816 31.111512301102344 26.537637793331605 28.477545704798235 30 17.585700354281624 29.846220790282562 24.44033996222642 28.127738893209397 31 15.503678603611945 29.913651569578686 23.545531977928377 31.03713784888099 32 15.786517547433002 31.27322272833883 24.37692108284265 28.563338641385528 33 16.127683343825993 26.736998358207114 23.849356244367907 33.285962053598986 34 13.314878593736498 24.038069844091396 28.51195546173882 34.13509610043329 35 13.003493439000605 27.31347751484403 26.243534668987394 33.43949437716797 36 17.22663531212581 26.308033675270647 25.420940883111754 31.044390129491784 37 14.362601686232393 25.74281869915688 28.795103013245445 31.09947660136528 38 14.539588193904383 29.98987766791344 26.904880939154907 28.56565319902727 39 17.812372699329703 27.241263316421634 27.795831327383375 27.150532656865284 40 20.150075917490646 24.37229196755916 28.642805120418718 26.834826994531475 41 15.086595316569765 22.72000641903986 26.784061030255895 35.40933723413448 42 17.52598476712464 20.406065992667482 28.161222827093287 33.90672641311459 43 20.08480539199348 19.8229517707909 27.80539816563592 32.2868446715797 44 17.152723771432804 21.860071103210753 27.616838869755213 33.37036625560123 45 17.570269970003334 21.604389635719485 26.052043600093818 34.77329679418336 46 18.869816933920923 21.76054512461578 31.144224715772324 28.22541322569097 47 12.726672345048081 22.135040551049883 35.18760261205545 29.950684491846584 48 12.66649384636275 22.085046105988223 32.84372724018319 32.404732807465834 49 17.57798516214248 18.973354812428248 34.73765260650051 28.711007418928762 50 18.626325470009505 18.445481366267945 30.358509548321795 32.569683615400756 51 15.132423557876285 17.845393721685245 27.42627362391833 39.59590909652014 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 228.0 1 388.0 2 548.0 3 1738.5 4 2929.0 5 2009.0 6 1089.0 7 1142.5 8 1196.0 9 1411.5 10 1627.0 11 1661.0 12 1695.0 13 1703.5 14 1712.0 15 1574.0 16 1436.0 17 1421.0 18 1406.0 19 1413.5 20 1421.0 21 1560.5 22 1700.0 23 1901.0 24 2102.0 25 2240.0 26 2916.0 27 3454.0 28 3999.0 29 4544.0 30 5217.0 31 5890.0 32 7112.0 33 8334.0 34 9084.5 35 9835.0 36 11418.0 37 13001.0 38 14856.5 39 16712.0 40 20308.5 41 23905.0 42 29802.5 43 35700.0 44 44631.5 45 53563.0 46 66435.0 47 79307.0 48 100403.5 49 121500.0 50 112589.5 51 103679.0 52 78764.5 53 53850.0 54 42546.5 55 31243.0 56 25451.0 57 19659.0 58 16630.0 59 13601.0 60 11825.0 61 10049.0 62 8331.0 63 6613.0 64 5496.5 65 4380.0 66 3692.0 67 3004.0 68 2408.0 69 1812.0 70 1542.5 71 1273.0 72 1017.5 73 762.0 74 637.0 75 354.0 76 196.0 77 170.5 78 145.0 79 98.5 80 52.0 81 36.5 82 21.0 83 14.0 84 7.0 85 4.5 86 2.0 87 1.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 648072.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.296487200114125 #Duplication Level Percentage of deduplicated Percentage of total 1 64.64926448194906 20.232948783561117 2 14.123803073876747 8.840508442370323 3 6.4376798453579065 6.044302946360293 4 3.5972850206688065 4.503295384180943 5 2.241347447317918 3.5073150847996843 6 1.4563768077153534 2.7347686872723984 7 1.07090371821198 2.3460867156703107 8 0.7698412312292094 1.9274660991428043 9 0.6378193678150902 1.7965355112728867 >10 4.726935404098068 27.13958062380339 >50 0.17872233281471622 3.8248444320436157 >100 0.09259708608052986 5.761182637240949 >500 0.00995667592263762 2.086222124906193 >1k 0.005476171757450691 3.240733397912533 >5k 9.95667592263762E-4 2.5659441504914184 >10k+ 9.95667592263762E-4 3.448264978971163 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCTGC 11222 1.7315977237097113 TruSeq Adapter, Index 13 (96% over 25bp) CTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCTGCT 10910 1.683454924761446 TruSeq Adapter, Index 13 (100% over 25bp) TCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCTGC 9308 1.4362601686232395 TruSeq Adapter, Index 13 (96% over 25bp) GCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCTGC 7161 1.1049698181683518 TruSeq Adapter, Index 13 (96% over 25bp) CGCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCTG 3139 0.48435976249552526 TruSeq Adapter, Index 13 (100% over 23bp) TCCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCTG 2860 0.44130899035909593 TruSeq Adapter, Index 13 (100% over 23bp) TGCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCTG 2003 0.30907059709415 TruSeq Adapter, Index 13 (100% over 23bp) GCCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCTG 1884 0.29070843980298483 TruSeq Adapter, Index 13 (95% over 24bp) CGTTCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTC 1871 0.28870248984680713 TruSeq Adapter, Index 13 (100% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1740 0.26848868644224716 No Hit TTCCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCT 1714 0.2644767865298917 TruSeq Adapter, Index 13 (95% over 23bp) TTCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCTG 1688 0.26046488661753636 TruSeq Adapter, Index 13 (100% over 23bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCC 1541 0.23778222172844993 No Hit CGTCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCT 1304 0.2012122109889025 TruSeq Adapter, Index 13 (100% over 22bp) TTTCCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTC 1056 0.1629448579787431 TruSeq Adapter, Index 13 (100% over 21bp) GTCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCTG 988 0.15245219666950588 TruSeq Adapter, Index 13 (95% over 24bp) TGCCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCT 931 0.14365687763088053 TruSeq Adapter, Index 13 (100% over 22bp) TTTCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCT 820 0.12652915108197854 TruSeq Adapter, Index 13 (95% over 23bp) TTGCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCT 804 0.12406028959745213 TruSeq Adapter, Index 13 (95% over 23bp) GGCCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCT 792 0.12220864348405733 TruSeq Adapter, Index 13 (100% over 22bp) ACTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCTGC 779 0.12020269352787961 TruSeq Adapter, Index 13 (100% over 24bp) GTCCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCT 730 0.11264180523151748 TruSeq Adapter, Index 13 (95% over 23bp) GTTTCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTC 720 0.11109876680368848 TruSeq Adapter, Index 13 (100% over 21bp) CGTTTTTCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTC 710 0.10955572837585947 No Hit GGCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCTG 687 0.10600673999185276 TruSeq Adapter, Index 13 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.9508634843042132 0.0 2 0.0 0.0 0.0 7.000302435531855 0.0 3 0.0 0.0 0.0 9.740430075670604 0.0 4 0.0 0.0 0.0 12.304034119665717 0.0 5 0.0 0.0 0.0 16.1799923465294 0.0 6 0.0 0.0 0.0 18.155698749521658 0.0 7 0.0 0.0 0.0 20.000401189991237 0.0 8 0.0 0.0 0.0 22.747472503055217 0.0 9 0.0 0.0 0.0 23.976965522349367 0.0 10 0.0 0.0 0.0 26.341826216840104 0.0 11 0.0 0.0 0.0 30.683010529694233 0.0 12 0.0 0.0 0.0 34.64707625078695 0.0 13 0.0 0.0 0.0 36.00170968657803 0.0 14 0.0 0.0 0.0 36.518164648372405 0.0 15 0.0 0.0 0.0 37.21592662543668 0.0 16 0.0 0.0 0.0 38.71390833117308 0.0 17 0.0 0.0 0.0 40.825865027342644 0.0 18 0.0 0.0 0.0 43.264637262526385 0.0 19 0.0 0.0 0.0 44.69642261970892 0.0 20 0.0 0.0 0.0 46.358892221851896 0.0 21 0.0 0.0 0.0 48.392616869730524 0.0 22 0.0 0.0 0.0 50.27126615561234 0.0 23 1.5430384278290065E-4 0.0 0.0 51.872168524484934 0.0 24 1.5430384278290065E-4 0.0 0.0 53.05351874483082 0.0 25 1.5430384278290065E-4 0.0 0.0 54.100778925798366 0.0 26 1.5430384278290065E-4 0.0 0.0 55.03323704773544 0.0 27 1.5430384278290065E-4 0.0 0.0 56.02541075682949 0.0 28 1.5430384278290065E-4 0.0 0.0 56.996444839462285 0.0 29 1.5430384278290065E-4 0.0 0.0 57.956369045414704 0.0 30 1.5430384278290065E-4 0.0 0.0 59.00254909948277 0.0 31 1.5430384278290065E-4 0.0 0.0 59.919885444827116 0.0 32 1.5430384278290065E-4 0.0 0.0 60.728437581009516 0.0 33 1.5430384278290065E-4 0.0 0.0 61.5317433865373 0.0 34 1.5430384278290065E-4 0.0 0.0 62.34091273809083 0.0 35 1.5430384278290065E-4 0.0 0.0 63.21442679208483 0.0 36 1.5430384278290065E-4 0.0 0.0 63.95971435272624 0.0 37 1.5430384278290065E-4 0.0 0.0 64.72212963991656 0.0 38 1.5430384278290065E-4 0.0 0.0 65.53083607994174 0.0 39 1.5430384278290065E-4 0.0 0.0 66.70709427347579 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTCGTG 20 7.031006E-4 45.000004 1 ATCTCGT 20 7.031006E-4 45.000004 11 GTCGAGG 20 7.031006E-4 45.000004 2 CACGGTA 20 7.031006E-4 45.000004 45 CACGGGC 20 7.031006E-4 45.000004 4 ACCATCG 20 7.031006E-4 45.000004 1 TCGGGTA 60 0.0 45.000004 5 CCAGATA 20 7.031006E-4 45.000004 44 TACGCGG 45 3.8380676E-10 45.000004 2 CTACGAA 40 6.8066583E-9 45.000004 11 GCGATCG 20 7.031006E-4 45.000004 9 TCCGTAA 45 3.8380676E-10 45.000004 21 CGTGTAA 30 2.1640299E-6 45.000004 17 ATGCGCC 20 7.031006E-4 45.000004 10 GAACCGC 20 7.031006E-4 45.000004 9 GTCTTCG 20 7.031006E-4 45.000004 1 GGTCTCG 20 7.031006E-4 45.000004 1 CGACTGA 20 7.031006E-4 45.000004 2 TGTGTCG 20 7.031006E-4 45.000004 1 ATGCACG 20 7.031006E-4 45.000004 35 >>END_MODULE