SRR2933987.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933987.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2477541
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	8616	0.3477641742356635	No Hit
CTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGCT	7520	0.3035267630283414	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	7182	0.28988420373265267	No Hit
GCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	7129	0.2877449858549263	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6019	0.24294249822707273	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	3610	0.1457089912941905	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	3408	0.13755574579795046	No Hit
TCCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTG	2909	0.11741480766614962	No Hit
CGCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTG	2816	0.11366108572976188	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCGAC	20	7.034866E-4	45.000004	19
TACGGGA	435	0.0	40.344826	4
CGTTTTT	3035	0.0	39.73641	1
TTTGGGA	13875	0.0	39.064865	4
CGTTTGG	1835	0.0	38.86921	2
TTTGGGC	4830	0.0	38.757763	4
GACCGAT	865	0.0	38.757225	9
TATTGCG	220	0.0	37.840908	1
TTACGGG	510	0.0	37.5	3
CGCTAAA	30	1.1403029E-4	37.499996	22
TTCGGGA	2520	0.0	37.410713	4
TTGGGAT	8420	0.0	37.143707	5
TTGGGAC	5240	0.0	37.142174	5
TTGCTCG	400	0.0	37.125004	1
TTTCGCG	895	0.0	36.955307	1
TTGGGCA	2680	0.0	36.856342	5
TCTGGGA	6815	0.0	36.58107	4
TTTTGCG	2220	0.0	36.486485	1
TTTGTCG	705	0.0	36.382977	1
GCGATGT	490	0.0	36.27551	9