##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933984.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 354857 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.31796188323747 33.0 31.0 34.0 31.0 34.0 2 32.540795306278305 34.0 31.0 34.0 31.0 34.0 3 32.61431788016018 34.0 31.0 34.0 31.0 34.0 4 36.01634179401844 37.0 35.0 37.0 35.0 37.0 5 36.056431182138155 37.0 35.0 37.0 35.0 37.0 6 35.60836618694291 37.0 35.0 37.0 33.0 37.0 7 36.02223712650448 37.0 35.0 37.0 35.0 37.0 8 35.99978864725791 37.0 35.0 37.0 35.0 37.0 9 37.897462921683946 39.0 38.0 39.0 35.0 39.0 10 37.53705013568846 39.0 37.0 39.0 35.0 39.0 11 37.43517529596429 39.0 37.0 39.0 35.0 39.0 12 37.270703410106044 39.0 37.0 39.0 35.0 39.0 13 37.12430641075137 39.0 37.0 39.0 33.0 39.0 14 38.29490189005712 40.0 38.0 41.0 34.0 41.0 15 38.35238701786917 40.0 37.0 41.0 34.0 41.0 16 38.47635808226976 40.0 38.0 41.0 34.0 41.0 17 38.4360460692617 40.0 37.0 41.0 34.0 41.0 18 38.41550821880363 40.0 37.0 41.0 34.0 41.0 19 38.45084921531772 40.0 37.0 41.0 34.0 41.0 20 38.35008750003522 40.0 37.0 41.0 34.0 41.0 21 38.298390619319896 40.0 37.0 41.0 34.0 41.0 22 38.31045463383842 40.0 37.0 41.0 34.0 41.0 23 38.244289953417855 40.0 37.0 41.0 34.0 41.0 24 38.193771011985106 40.0 37.0 41.0 34.0 41.0 25 38.11771220519815 40.0 37.0 41.0 34.0 41.0 26 38.05359060128446 40.0 37.0 41.0 34.0 41.0 27 38.02843398890257 40.0 37.0 41.0 34.0 41.0 28 37.96490980873986 40.0 36.0 41.0 34.0 41.0 29 37.90515616149604 40.0 36.0 41.0 34.0 41.0 30 37.85451040841804 40.0 36.0 41.0 34.0 41.0 31 37.81945121556007 40.0 36.0 41.0 34.0 41.0 32 37.681001079308004 40.0 36.0 41.0 33.0 41.0 33 37.60607512321865 40.0 36.0 41.0 33.0 41.0 34 37.640531256252515 40.0 36.0 41.0 33.0 41.0 35 37.62417255401471 40.0 36.0 41.0 33.0 41.0 36 37.54174498459943 40.0 36.0 41.0 33.0 41.0 37 37.467568626235355 40.0 36.0 41.0 33.0 41.0 38 37.40093615174563 40.0 35.0 41.0 33.0 41.0 39 37.333292002130435 40.0 35.0 41.0 33.0 41.0 40 37.27563779212471 39.0 35.0 41.0 32.0 41.0 41 37.2292641824735 39.0 35.0 41.0 32.0 41.0 42 37.24740388381799 39.0 35.0 41.0 32.0 41.0 43 37.099713405681726 39.0 35.0 41.0 32.0 41.0 44 36.959862705258736 39.0 35.0 41.0 32.0 41.0 45 36.99524597232124 39.0 35.0 41.0 32.0 41.0 46 36.94638403638649 39.0 35.0 41.0 32.0 41.0 47 36.82578616174966 39.0 35.0 41.0 31.0 41.0 48 36.801376329056495 39.0 35.0 41.0 31.0 41.0 49 36.82921007617153 39.0 35.0 41.0 31.0 41.0 50 36.72970520519533 39.0 35.0 41.0 31.0 41.0 51 35.79826239865636 38.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 5.0 10 8.0 11 6.0 12 5.0 13 2.0 14 2.0 15 5.0 16 14.0 17 12.0 18 23.0 19 79.0 20 154.0 21 278.0 22 384.0 23 611.0 24 853.0 25 1339.0 26 1802.0 27 2238.0 28 2735.0 29 3342.0 30 4247.0 31 5539.0 32 7621.0 33 10863.0 34 20250.0 35 30347.0 36 24496.0 37 39724.0 38 79467.0 39 118339.0 40 67.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.435195022220217 4.276370481630629 55.14164860774904 16.146785888400117 2 17.873115085795124 7.306323392239691 52.68460253003322 22.13595899193196 3 19.06176290731196 7.702821136401424 52.36700980958528 20.868406146701346 4 18.858864274905102 4.315822993487518 54.11109263731587 22.714220094291505 5 20.475008242756942 5.20096827736243 49.676630304601574 24.647393175279056 6 19.945217369250148 8.443682948342571 52.57413549683394 19.036964185573343 7 80.24781813519249 1.4360714315907535 12.88885381998946 5.4272566132273 8 80.84242384960703 4.183093471454699 8.275446165638552 6.699036513299723 9 75.95848468538031 4.921700854146882 10.755881946812378 8.363932513660433 10 37.267969914641675 35.56221238414347 15.508218803630758 11.661598897584097 11 26.97819121505282 23.661925789825197 31.35882904944809 18.001053945673892 12 25.255525465187382 21.022552746599334 33.12376534773162 20.598156440481656 13 22.031973442823446 25.099688043352675 35.15866954857872 17.709668965245154 14 17.720941111489978 30.082540290877734 30.401542029606293 21.794976568025994 15 14.18064177964645 26.40922963334526 39.85267304858014 19.557455538428155 16 17.01445934559555 25.747836452430136 34.427670864601794 22.810033337372516 17 16.804515621785676 25.459269508562603 31.162411901132003 26.573802968519715 18 17.431246952997967 25.569736541761895 33.901825242280694 23.097191262959445 19 20.693687879906552 26.298762600145974 31.073361945797885 21.934187574149586 20 23.131007701693925 26.454600021980685 32.046711774038556 18.367680502286838 21 21.74819716110997 27.983103052779008 30.36462575065449 19.90407403545654 22 19.57323654317091 25.274688113803588 29.72915850610246 25.422916836923044 23 18.993284618874647 27.345944986290256 29.72042259276272 23.940347802072385 24 20.87488763079212 23.981772939522116 30.230487210341067 24.912852219344693 25 17.119008502016307 27.383988479866538 29.127789503941028 26.36921351417613 26 17.343042408632208 27.637329966718987 29.33857863871926 25.681048985929543 27 20.897995530594013 28.289423626982135 28.342402714332813 22.470178128091035 28 15.972349425261442 26.355968742338465 31.9858421843165 25.68583964808359 29 18.2360781948785 25.508303344727594 30.04506040461369 26.210558055780215 30 20.55926753593701 27.964785815131165 28.29139625257498 23.184550396356844 31 20.733140391763445 27.560679372254178 24.599204750082425 27.10697548589995 32 20.39920305926049 30.8304471942219 25.49815841310725 23.272191333410362 33 20.076256069346243 29.744375903532973 25.276097132084193 24.90327089503659 34 17.66007152176792 26.461926917039825 27.696790538160442 28.18121102303181 35 17.308944166241613 26.464744953601027 27.376097977495164 28.850212902662197 36 20.942520508261076 26.842643656458797 26.188013763290563 26.026822071989564 37 20.148679608969246 27.762450790036553 28.891919843768054 23.19694975722615 38 17.155924780968107 30.021670701155678 27.09147628481332 25.730928233062894 39 18.75938758429452 29.895986270525874 28.192201365620516 23.152424779559087 40 20.42146554809402 25.296668798981 29.771710858176675 24.510154794748306 41 16.864257996883254 25.846185928416237 28.046227071750028 29.243329002950485 42 20.155442896716142 23.861724582014727 29.169214641390756 26.81361787987837 43 21.712689900438768 26.024004035428355 26.90858571199103 25.354720352141847 44 19.43994341382585 25.532256655497847 28.160075748822766 26.867724181853536 45 18.97722181047577 25.229035921512043 26.01667714036922 29.777065127642967 46 21.883181112391753 25.535638299371293 27.771186703376287 24.809993884860663 47 16.820860233840673 24.84521934187574 32.19127704962844 26.142643374655144 48 18.119693284900677 24.645984156998452 30.055487139890154 27.178835418210717 49 18.66272893024514 22.95769845317973 32.845906942796674 25.53366567377845 50 19.44501587963602 23.41450217975128 29.360277520240547 27.78020442037215 51 17.983582118994413 22.57134564063834 26.641435845988664 32.803636394378586 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 34.0 1 121.0 2 208.0 3 616.5 4 1025.0 5 725.0 6 425.0 7 459.0 8 493.0 9 576.0 10 659.0 11 676.0 12 693.0 13 708.5 14 724.0 15 729.0 16 734.0 17 788.5 18 843.0 19 912.0 20 981.0 21 1031.5 22 1082.0 23 1286.0 24 1490.0 25 1957.0 26 3229.5 27 4035.0 28 4690.5 29 5346.0 30 5720.5 31 6095.0 32 6829.5 33 7564.0 34 8773.0 35 9982.0 36 10750.5 37 11519.0 38 12015.5 39 12512.0 40 15463.5 41 18415.0 42 20821.5 43 23228.0 44 25990.0 45 28752.0 46 37218.0 47 45684.0 48 47708.5 49 49733.0 50 45913.0 51 42093.0 52 33546.5 53 25000.0 54 20497.5 55 15995.0 56 13374.5 57 10754.0 58 9706.0 59 8658.0 60 7774.0 61 6890.0 62 5516.5 63 4143.0 64 3478.0 65 2813.0 66 2217.0 67 1621.0 68 1297.0 69 973.0 70 787.5 71 602.0 72 425.0 73 248.0 74 229.0 75 146.5 76 83.0 77 58.0 78 33.0 79 27.0 80 21.0 81 29.0 82 37.0 83 19.5 84 2.0 85 1.0 86 0.0 87 0.5 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 354857.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.66357452521857 #Duplication Level Percentage of deduplicated Percentage of total 1 66.11409028618893 18.950661540852057 2 13.751093048782423 7.883109608139802 3 6.1626868352864825 5.299339001364524 4 3.140629690156459 3.6008669271965514 5 1.9115034950257288 2.7395261442442873 6 1.201057187147753 2.06559553157154 7 0.7763904239592166 1.5577887344474735 8 0.5995292780032876 1.3747721712078176 9 0.49061479207970105 1.2656496290356014 >10 5.3188239064401035 37.59056728913024 >50 0.4476485271621776 7.909522551040873 >100 0.07394194421875255 3.955906918995385 >500 0.004996077312077875 0.9308353233952359 >1k 0.006994508236909025 4.875858629378615 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCTGC 2902 0.8177942100620814 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGC 2531 0.713245053641326 No Hit GCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCTGC 2503 0.7053545512699482 No Hit CTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCTGCT 2394 0.674637952752799 TruSeq Adapter, Index 13 (96% over 25bp) TCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCTGC 2341 0.6597023589784053 No Hit GAATCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTC 2277 0.6416669249866848 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCG 2076 0.5850243901064373 No Hit TCCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCTG 884 0.2491144320106409 TruSeq Adapter, Index 13 (95% over 23bp) CGCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCTG 622 0.17528187410703466 TruSeq Adapter, Index 13 (95% over 23bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 618 0.17415465948255213 No Hit TGCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCTG 576 0.16231890592548548 TruSeq Adapter, Index 13 (95% over 23bp) GAATGACTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCT 550 0.15499201086634898 No Hit GAACTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCT 498 0.140338220748076 TruSeq Adapter, Index 13 (95% over 22bp) GCCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCTG 491 0.13836559515523153 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTC 489 0.13780198784299028 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGCAACTAT 482 0.13582936225014583 No Hit TTCCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCT 476 0.13413854031342204 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGCAACTATCGTA 417 0.1175121246023046 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.818036561206345E-4 0.0 0.0 0.7028183183648624 0.0 2 2.818036561206345E-4 0.0 0.0 3.0575696689088843 0.0 3 2.818036561206345E-4 0.0 0.0 4.239172399022705 0.0 4 2.818036561206345E-4 0.0 0.0 5.5625223681652045 0.0 5 2.818036561206345E-4 0.0 0.0 8.014214176414725 0.0 6 2.818036561206345E-4 0.0 0.0 9.085913480641498 0.0 7 2.818036561206345E-4 0.0 0.0 10.268643425379802 0.0 8 2.818036561206345E-4 0.0 0.0 12.195335022276579 0.0 9 2.818036561206345E-4 0.0 0.0 13.024683182239606 0.0 10 2.818036561206345E-4 0.0 0.0 15.083540693856962 0.0 11 2.818036561206345E-4 0.0 0.0 17.58792978580104 0.0 12 2.818036561206345E-4 0.0 0.0 20.876578452728847 0.0 13 2.818036561206345E-4 0.0 0.0 21.728189101525402 0.0 14 2.818036561206345E-4 0.0 0.0 22.036764104977497 0.0 15 2.818036561206345E-4 0.0 0.0 22.527384270283523 0.0 16 2.818036561206345E-4 0.0 0.0 23.479317020659025 0.0 17 2.818036561206345E-4 0.0 0.0 24.86663641974091 0.0 18 2.818036561206345E-4 0.0 0.0 26.593529224448158 0.0 19 2.818036561206345E-4 0.0 0.0 27.781331634996633 0.0 20 2.818036561206345E-4 0.0 0.0 28.889101807206846 0.0 21 2.818036561206345E-4 0.0 0.0 30.199488808167796 0.0 22 2.818036561206345E-4 0.0 0.0 31.652186655469666 0.0 23 2.818036561206345E-4 0.0 0.0 32.935238701786915 0.0 24 2.818036561206345E-4 0.0 0.0 33.83701040137295 0.0 25 2.818036561206345E-4 0.0 0.0 34.58970796687116 0.0 26 2.818036561206345E-4 0.0 0.0 35.279563317054475 0.0 27 2.818036561206345E-4 0.0 0.0 35.981254420794855 0.0 28 2.818036561206345E-4 0.0 0.0 36.732261164356345 0.0 29 2.818036561206345E-4 0.0 0.0 37.52863829655326 0.0 30 2.818036561206345E-4 0.0 0.0 38.42590113764136 0.0 31 2.818036561206345E-4 0.0 0.0 39.27103030234714 0.0 32 2.818036561206345E-4 0.0 0.0 40.026264100750446 0.0 33 2.818036561206345E-4 0.0 0.0 40.69413876575635 0.0 34 2.818036561206345E-4 0.0 0.0 41.3927300292794 0.0 35 2.818036561206345E-4 0.0 0.0 42.113301977979866 0.0 36 2.818036561206345E-4 0.0 0.0 42.84260984002007 0.0 37 2.818036561206345E-4 0.0 0.0 43.526829117080965 0.0 38 2.818036561206345E-4 0.0 0.0 44.26684551805375 0.0 39 2.818036561206345E-4 0.0 0.0 44.99643518375007 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTTG 115 0.0 45.000004 1 GAGTCGG 45 3.8380676E-10 45.000004 15 CTCGTTT 20 7.02669E-4 45.0 45 CGTATGG 25 3.8853374E-5 45.0 2 GTTTCCG 20 7.02669E-4 45.0 1 TTTACCG 20 7.02669E-4 45.0 1 ATGGCGT 20 7.02669E-4 45.0 12 TCCGAAT 25 3.8853374E-5 45.0 37 AACCCAT 20 7.02669E-4 45.0 20 GTGGGCG 50 2.1827873E-11 45.0 5 GCTATCC 20 7.02669E-4 45.0 21 TGGCGAT 20 7.02669E-4 45.0 6 TGAACCG 20 7.02669E-4 45.0 35 ATTCGTT 20 7.02669E-4 45.0 20 CGTCTTA 20 7.02669E-4 45.0 18 GCGCCAC 20 7.02669E-4 45.0 14 TTACTCG 20 7.02669E-4 45.0 1 ATTCGAA 25 3.8853374E-5 45.0 10 TACGGTA 25 3.8853374E-5 45.0 28 TGCGGTG 20 7.02669E-4 45.0 2 >>END_MODULE