SRR2933983.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933983.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2062189
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC	5861	0.2842125527776552	No Hit
CTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGCT	4671	0.22650688176495945	No Hit
TCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC	4316	0.20929216478218052	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3661	0.1775297996449404	No Hit
GCTGTCTCTTATACACATCTGACGCGTGAAGCTTCGTATGCCGTCTTCTGC	3549	0.1720986776672749	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTACGT	20	7.0345897E-4	45.000004	23
CGCGCAT	25	3.8918883E-5	45.0	36
TTATCCG	60	3.6379788E-12	41.249996	1
TTTCGCG	580	0.0	39.181038	1
TTGGGAC	6070	0.0	39.069195	5
TTTGGGA	17510	0.0	38.832096	4
CGTAACC	140	0.0	38.571426	35
TTTTGCG	1830	0.0	38.360657	1
TACGGGA	440	0.0	38.352272	4
CGTTTTT	2175	0.0	38.172417	1
TCTTACG	95	0.0	37.894737	1
TTGGGAT	11105	0.0	37.807293	5
TCGTTTG	680	0.0	37.72059	1
GCTACGA	215	0.0	37.67442	10
TTCGGGA	3280	0.0	37.66006	4
TTGTTCG	540	0.0	37.5	1
TAGCGCG	30	1.1402365E-4	37.499996	1
CGGCACG	30	1.1402365E-4	37.499996	13
ATATCGC	30	1.1402365E-4	37.499996	45
CGCACGA	30	1.1402365E-4	37.499996	40