SRR2933980.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933980.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1072432
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGC	4784	0.4460888895519716	No Hit
GCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGC	4431	0.41317304966655233	No Hit
CTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGCT	4237	0.3950833246303728	No Hit
TCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTGC	3950	0.3683217210974682	No Hit
TCCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTG	1541	0.14369209423068316	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1358	0.12662807525325614	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1167	0.1088180882331001	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTG	1157	0.10788562817968879	No Hit
GCCTGTCTCTTATACACATCTGACGCGTCCAACTTCGTATGCCGTCTTCTG	1109	0.10340981992331448	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGAT	20	7.0330745E-4	45.000004	17
ATGTCGC	20	7.0330745E-4	45.000004	1
TCTAGCG	25	3.8906303E-5	45.0	1
CGTAGCA	25	3.8906303E-5	45.0	21
ATTATCG	35	1.211829E-7	45.0	30
ATCGCTA	35	1.211829E-7	45.0	10
GGTCGAC	30	2.165365E-6	44.999996	9
ACACGCG	180	0.0	41.25	36
CGTTTGG	715	0.0	40.594402	2
GGACCGT	50	1.0822987E-9	40.5	8
TAGTCGG	50	1.0822987E-9	40.5	2
GACCGAT	545	0.0	39.63303	9
CGCTTGG	330	0.0	39.545452	2
TCTTACG	40	3.4579352E-7	39.375004	1
TATCGCG	40	3.4579352E-7	39.375004	32
TTTGGGA	7540	0.0	39.121353	4
GCGGGAT	860	0.0	38.720932	5
TTTACGG	140	0.0	38.571426	2
CTAGTCG	35	6.2478994E-6	38.571426	1
CGTAAGG	35	6.2478994E-6	38.571426	2