Basic Statistics
Measure | Value |
---|---|
Filename | SRR2933978.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 475313 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC | 3781 | 0.7954758232995941 | No Hit |
CTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGCT | 3061 | 0.6439966927056487 | No Hit |
TCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC | 2471 | 0.5198679606911656 | No Hit |
GCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC | 2369 | 0.49840841719035667 | No Hit |
TCCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTG | 1095 | 0.2303745111116254 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCG | 993 | 0.20891496761081646 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGC | 955 | 0.2009202357183582 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 811 | 0.17062440959956912 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTC | 787 | 0.16557510524643762 | No Hit |
CGCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTG | 745 | 0.15673882262845745 | No Hit |
GCCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTG | 618 | 0.13001958709313652 | No Hit |
TGCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTG | 606 | 0.12749493491657077 | No Hit |
TTCCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCT | 558 | 0.11739632621030774 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGAACGA | 35 | 1.209919E-7 | 45.0 | 22 |
GGTCGAA | 20 | 7.029108E-4 | 45.0 | 11 |
CAACGGT | 20 | 7.029108E-4 | 45.0 | 12 |
TCCGATA | 35 | 1.209919E-7 | 45.0 | 14 |
GCCGGTC | 20 | 7.029108E-4 | 45.0 | 44 |
CACGATT | 25 | 3.887341E-5 | 45.0 | 10 |
TTCCGCA | 20 | 7.029108E-4 | 45.0 | 22 |
TCGATAA | 25 | 3.887341E-5 | 45.0 | 23 |
GCGCAAC | 20 | 7.029108E-4 | 45.0 | 9 |
ATTCCGA | 35 | 1.209919E-7 | 45.0 | 12 |
GACCAAT | 50 | 2.1827873E-11 | 45.0 | 9 |
GTATGGA | 20 | 7.029108E-4 | 45.0 | 14 |
TCGTCTA | 20 | 7.029108E-4 | 45.0 | 1 |
GTCGTCA | 20 | 7.029108E-4 | 45.0 | 11 |
AACGAGT | 20 | 7.029108E-4 | 45.0 | 30 |
AATTCCG | 35 | 1.209919E-7 | 45.0 | 11 |
CTCGACC | 25 | 3.887341E-5 | 45.0 | 37 |
CCGAATC | 20 | 7.029108E-4 | 45.0 | 40 |
GTAAGCG | 20 | 7.029108E-4 | 45.0 | 20 |
ACGAGGC | 20 | 7.029108E-4 | 45.0 | 29 |