FastQCFastQC Report
Sat 14 Jan 2017
SRR2933978.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2933978.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475313
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC37810.7954758232995941No Hit
CTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGCT30610.6439966927056487No Hit
TCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC24710.5198679606911656No Hit
GCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC23690.49840841719035667No Hit
TCCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTG10950.2303745111116254No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCG9930.20891496761081646No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGC9550.2009202357183582No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8110.17062440959956912No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTC7870.16557510524643762No Hit
CGCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTG7450.15673882262845745No Hit
GCCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTG6180.13001958709313652No Hit
TGCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTG6060.12749493491657077No Hit
TTCCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCT5580.11739632621030774No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAACGA351.209919E-745.022
GGTCGAA207.029108E-445.011
CAACGGT207.029108E-445.012
TCCGATA351.209919E-745.014
GCCGGTC207.029108E-445.044
CACGATT253.887341E-545.010
TTCCGCA207.029108E-445.022
TCGATAA253.887341E-545.023
GCGCAAC207.029108E-445.09
ATTCCGA351.209919E-745.012
GACCAAT502.1827873E-1145.09
GTATGGA207.029108E-445.014
TCGTCTA207.029108E-445.01
GTCGTCA207.029108E-445.011
AACGAGT207.029108E-445.030
AATTCCG351.209919E-745.011
CTCGACC253.887341E-545.037
CCGAATC207.029108E-445.040
GTAAGCG207.029108E-445.020
ACGAGGC207.029108E-445.029