SRR2933978.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933978.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	475313
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC	3781	0.7954758232995941	No Hit
CTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGCT	3061	0.6439966927056487	No Hit
TCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC	2471	0.5198679606911656	No Hit
GCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC	2369	0.49840841719035667	No Hit
TCCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTG	1095	0.2303745111116254	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCG	993	0.20891496761081646	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGC	955	0.2009202357183582	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	811	0.17062440959956912	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTC	787	0.16557510524643762	No Hit
CGCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTG	745	0.15673882262845745	No Hit
GCCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTG	618	0.13001958709313652	No Hit
TGCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTG	606	0.12749493491657077	No Hit
TTCCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCT	558	0.11739632621030774	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACGA	35	1.209919E-7	45.0	22
GGTCGAA	20	7.029108E-4	45.0	11
CAACGGT	20	7.029108E-4	45.0	12
TCCGATA	35	1.209919E-7	45.0	14
GCCGGTC	20	7.029108E-4	45.0	44
CACGATT	25	3.887341E-5	45.0	10
TTCCGCA	20	7.029108E-4	45.0	22
TCGATAA	25	3.887341E-5	45.0	23
GCGCAAC	20	7.029108E-4	45.0	9
ATTCCGA	35	1.209919E-7	45.0	12
GACCAAT	50	2.1827873E-11	45.0	9
GTATGGA	20	7.029108E-4	45.0	14
TCGTCTA	20	7.029108E-4	45.0	1
GTCGTCA	20	7.029108E-4	45.0	11
AACGAGT	20	7.029108E-4	45.0	30
AATTCCG	35	1.209919E-7	45.0	11
CTCGACC	25	3.887341E-5	45.0	37
CCGAATC	20	7.029108E-4	45.0	40
GTAAGCG	20	7.029108E-4	45.0	20
ACGAGGC	20	7.029108E-4	45.0	29