##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933976.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1346879 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.370605674303334 33.0 31.0 34.0 31.0 34.0 2 32.59781316658735 34.0 31.0 34.0 31.0 34.0 3 32.653121030174205 34.0 31.0 34.0 31.0 34.0 4 36.04069482113835 37.0 35.0 37.0 35.0 37.0 5 36.07210670000794 37.0 35.0 37.0 35.0 37.0 6 35.7108983063809 37.0 35.0 37.0 35.0 37.0 7 36.04711559093282 37.0 35.0 37.0 35.0 37.0 8 36.05560633137795 37.0 36.0 37.0 35.0 37.0 9 37.87930021924761 39.0 38.0 39.0 35.0 39.0 10 37.54422483385664 39.0 37.0 39.0 35.0 39.0 11 37.515991414225034 39.0 37.0 39.0 35.0 39.0 12 37.22273938490392 39.0 37.0 39.0 34.0 39.0 13 37.078085707773305 39.0 37.0 39.0 33.0 39.0 14 37.910271078545286 40.0 37.0 41.0 33.0 41.0 15 38.03936062556473 40.0 37.0 41.0 33.0 41.0 16 38.24966830724957 40.0 37.0 41.0 33.0 41.0 17 38.28450068640167 40.0 37.0 41.0 34.0 41.0 18 38.25514392903891 40.0 37.0 41.0 34.0 41.0 19 38.29699921076801 40.0 37.0 41.0 34.0 41.0 20 38.2192201378149 40.0 37.0 41.0 34.0 41.0 21 38.13797453223341 40.0 37.0 41.0 34.0 41.0 22 38.210370048088954 40.0 37.0 41.0 34.0 41.0 23 38.19470865608566 40.0 37.0 41.0 34.0 41.0 24 38.15075222050385 40.0 37.0 41.0 34.0 41.0 25 38.060484275127905 40.0 36.0 41.0 34.0 41.0 26 38.0264648866008 40.0 36.0 41.0 34.0 41.0 27 38.0209677335529 40.0 36.0 41.0 34.0 41.0 28 37.9332144906855 40.0 36.0 41.0 34.0 41.0 29 37.90940611591687 40.0 36.0 41.0 34.0 41.0 30 37.84002571871712 40.0 36.0 41.0 34.0 41.0 31 37.72770234000233 40.0 36.0 41.0 33.0 41.0 32 37.680090787665414 40.0 36.0 41.0 33.0 41.0 33 37.63828673548255 40.0 36.0 41.0 33.0 41.0 34 37.5504659290107 40.0 36.0 41.0 33.0 41.0 35 37.53246356948174 40.0 35.0 41.0 33.0 41.0 36 37.44217632021882 40.0 35.0 41.0 33.0 41.0 37 37.33777421728307 40.0 35.0 41.0 32.0 41.0 38 37.28390746310544 39.0 35.0 41.0 32.0 41.0 39 37.28839413191534 39.0 35.0 41.0 32.0 41.0 40 37.215437318422815 39.0 35.0 41.0 32.0 41.0 41 37.069579375727145 39.0 35.0 41.0 32.0 41.0 42 37.04908532986259 39.0 35.0 41.0 32.0 41.0 43 36.960745545813694 39.0 35.0 41.0 32.0 41.0 44 36.87469846957299 39.0 35.0 41.0 31.0 41.0 45 36.9257052786479 39.0 35.0 41.0 32.0 41.0 46 36.86320894453028 39.0 35.0 41.0 32.0 41.0 47 36.76178112510478 39.0 35.0 41.0 31.0 41.0 48 36.69110068536224 39.0 35.0 41.0 31.0 41.0 49 36.69807310085019 39.0 35.0 41.0 31.0 41.0 50 36.6239216737361 39.0 35.0 41.0 31.0 41.0 51 35.66030207613304 38.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 6.0 9 15.0 10 34.0 11 29.0 12 14.0 13 16.0 14 32.0 15 32.0 16 64.0 17 137.0 18 237.0 19 384.0 20 697.0 21 1134.0 22 1705.0 23 2325.0 24 3492.0 25 5221.0 26 7068.0 27 8942.0 28 10990.0 29 13281.0 30 17304.0 31 22810.0 32 31233.0 33 48860.0 34 95517.0 35 91753.0 36 91285.0 37 147266.0 38 285491.0 39 459248.0 40 257.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.878923793451378 4.663299375816239 54.58040403035462 15.877372800377762 2 20.266334243833338 4.433954349277106 52.29504654835364 23.00466485853592 3 21.748056061457635 4.729823540199231 51.08803389168589 22.43408650665724 4 20.794889518657577 4.930212736259159 48.64475576499448 25.630141980088784 5 19.01685303579609 5.861773774778581 49.23293035231821 25.888442837107117 6 22.765519397065365 6.538449259361828 51.580579992709076 19.115451350863736 7 83.05259789483688 2.3827678655617914 9.377828297864916 5.186805941736415 8 83.55910219106542 2.986088579597722 7.817554509350877 5.637254719985982 9 77.33582600961185 5.976706148065268 10.455801894602262 6.23166594772062 10 37.16978288324341 32.53818642951594 17.00004232005993 13.291988367180718 11 32.38100824201729 22.757055385079134 25.69963597323887 19.162300399664705 12 29.857247755737525 20.817979937321766 29.567986433822192 19.75678587311852 13 27.891518094795448 21.794014161628475 30.993875470625053 19.320592272951025 14 21.25781157772896 23.367132459560214 33.98092924457208 21.394126718138747 15 18.18782533546072 24.268698227531946 36.541812590440564 21.001663846566768 16 24.69798697581594 24.960742575984927 29.0438859021486 21.297384546050534 17 24.835341556294217 24.093998050307412 28.163777147019147 22.906883246379223 18 25.239312514338703 23.10727244243915 30.837439740318175 20.815975302903972 19 25.101735196702897 24.900009577697773 28.73858750489094 21.259667720708393 20 24.070090928732277 28.964739965505437 28.57079217954991 18.394376926212377 21 23.729303077707797 26.16790372409103 32.0800903421911 18.022702856010078 22 22.193901605118203 22.95002000922132 32.39882721461987 22.457251171040607 23 21.183194629955622 24.72040918300753 31.6211775519553 22.475218635081546 24 22.383302434739868 25.754058085395943 28.635757183830172 23.226882296034017 25 22.680285311449655 25.8309024047446 26.455011920150213 25.033800363655534 26 20.084803460444476 25.61106083026018 26.89009183453005 27.41404387476529 27 20.97538086197795 24.235584636778803 30.987119110179904 23.80191539106334 28 17.311057637694255 24.81373605201358 31.39116431394357 26.484041996348594 29 19.98353229948644 25.109679488654884 30.244216444090377 24.6625717677683 30 24.091176712978672 22.76447995699688 29.383931295981302 23.760412034043146 31 21.689624680464988 24.15146423695076 30.522860628163333 23.636050454420925 32 23.381684620518993 24.33188133455195 28.578587980063542 23.707846064865514 33 23.863762075138155 24.071650088835003 27.190861242917887 24.87372659310896 34 18.467657451040516 23.318650004937343 32.448794583626295 25.76489796039585 35 18.695072088881034 25.82280962135426 28.869482707800774 26.612635581963932 36 22.959152232680143 25.892452105942702 26.73142873264785 24.416966928729305 37 20.731929148795103 26.78681603915422 29.868236122175784 22.613018689874888 38 19.99875267191782 25.438810761768504 31.05676159476835 23.50567497154533 39 19.828507237843933 22.766707328572203 29.702519676971722 27.70226575661214 40 21.918821215565764 21.908798043476807 29.615058219780693 26.557322521176737 41 19.053381929631392 23.064878136788828 28.694040073384468 29.18769986019531 42 19.8411290101041 23.312636101683967 31.32597657250577 25.52025831570616 43 20.613581472426254 22.80947286281841 30.823555790831993 25.753389873923343 44 20.769720219856424 21.289588745536907 30.109608955221663 27.831082079385006 45 20.47904822927672 20.281777353422246 28.124575407293456 31.11459901000758 46 20.732523114548524 20.988076879957294 30.55664243038907 27.72275757510511 47 17.088914445915336 23.053370050316325 34.31161967778843 25.546095825979915 48 17.566982631698913 24.27255900492917 32.7713922334523 25.389066129919613 49 21.320400718995543 20.947538717286406 33.02137756992276 24.710682993795285 50 19.442726480997923 21.744640758375475 30.36479149203455 28.447841268592057 51 18.056558903954993 21.563184220705793 27.93599128058274 32.44426559475647 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 228.0 1 835.0 2 1442.0 3 2548.0 4 3654.0 5 2606.0 6 1558.0 7 1572.5 8 1587.0 9 1639.0 10 1691.0 11 1744.0 12 1797.0 13 1770.5 14 1744.0 15 1773.5 16 1803.0 17 1806.0 18 1809.0 19 2221.5 20 2634.0 21 2942.0 22 3250.0 23 4283.0 24 5316.0 25 6060.5 26 9201.0 27 11597.0 28 14401.5 29 17206.0 30 18683.0 31 20160.0 32 23082.0 33 26004.0 34 30517.5 35 35031.0 36 37766.5 37 40502.0 38 43905.5 39 47309.0 40 52758.5 41 58208.0 42 63467.5 43 68727.0 44 77078.5 45 85430.0 46 100083.0 47 114736.0 48 139004.5 49 163273.0 50 161925.5 51 160578.0 52 138893.0 53 117208.0 54 102413.5 55 87619.0 56 79683.0 57 71747.0 58 65026.0 59 58305.0 60 50496.0 61 42687.0 62 36756.0 63 30825.0 64 25642.0 65 20459.0 66 16392.0 67 12325.0 68 10349.5 69 8374.0 70 6694.5 71 5015.0 72 4283.5 73 3552.0 74 2868.0 75 1666.0 76 1148.0 77 1022.5 78 897.0 79 570.0 80 243.0 81 199.5 82 156.0 83 94.5 84 33.0 85 24.0 86 15.0 87 9.5 88 4.0 89 3.0 90 2.0 91 1.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1346879.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.75160975968761 #Duplication Level Percentage of deduplicated Percentage of total 1 66.64198042337944 18.494222343223672 2 13.372911578782748 7.422396469703735 3 5.690751849712879 4.737825737173568 4 2.867678906564832 3.1833082372429953 5 1.750059951046011 2.428349040874345 6 1.1340911109927698 1.8883712366521148 7 0.829964072292341 1.6122987334172747 8 0.6195165791975303 1.3754065876437171 9 0.4952722674003025 1.237014242071996 >10 6.0342286496113235 41.21946698117984 >50 0.46715207550730764 7.897535073488628 >100 0.08721229407693595 4.474448676604459 >500 0.005940156223096688 1.100516252878866 >1k 0.0021600568083987954 1.051885828141453 >5k 0.0010800284041993977 1.8769545597033235 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCTGC 7161 0.5316735950296946 TruSeq Adapter, Index 13 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCTGC 6108 0.45349285273584333 TruSeq Adapter, Index 13 (95% over 21bp) CTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCTGCT 6097 0.4526761498248915 TruSeq Adapter, Index 16 (95% over 23bp) TCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCTGC 5683 0.4219384220854286 TruSeq Adapter, Index 13 (95% over 21bp) TCCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCTG 2234 0.16586493664241556 TruSeq Adapter, Index 16 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1942 0.14418518664260116 No Hit GCCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCTG 1851 0.1374288261974535 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 1766 0.13111794006737057 No Hit CGCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCTG 1753 0.13015274571806376 TruSeq Adapter, Index 16 (95% over 21bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC 1661 0.12332213955373868 No Hit TGCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCTG 1621 0.12035231078664083 TruSeq Adapter, Index 16 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.2273715753233958E-4 0.0 0.0 0.4701238938315914 0.0 2 2.2273715753233958E-4 0.0 0.0 1.983325896387129 0.0 3 2.2273715753233958E-4 0.0 0.0 2.8816248527150545 0.0 4 2.2273715753233958E-4 0.0 0.0 3.753789315892519 0.0 5 2.2273715753233958E-4 0.0 0.0 5.255780214852262 0.0 6 2.2273715753233958E-4 0.0 0.0 6.1067104023449765 0.0 7 2.2273715753233958E-4 0.0 0.0 6.897947031619024 0.0 8 3.7122859588723265E-4 0.0 0.0 8.10822649993058 0.0 9 3.7122859588723265E-4 0.0 0.0 8.661282862083379 0.0 10 4.4547431506467916E-4 0.0 0.0 9.8097898920393 0.0 11 4.4547431506467916E-4 0.0 0.0 12.046887656574942 0.0 12 4.4547431506467916E-4 0.0 0.0 14.113591495598342 0.0 13 4.4547431506467916E-4 0.0 0.0 14.787222905695314 0.0 14 4.4547431506467916E-4 0.0 0.0 15.046711694220491 0.0 15 4.4547431506467916E-4 0.0 0.0 15.443406571785587 0.0 16 4.4547431506467916E-4 0.0 0.0 16.26478696304568 0.0 17 4.4547431506467916E-4 0.0 0.0 17.393024911666156 0.0 18 4.4547431506467916E-4 0.0 0.0 18.55972214282055 0.0 19 4.4547431506467916E-4 0.0 0.0 19.38956654606687 0.0 20 4.4547431506467916E-4 0.0 0.0 20.39967955547603 0.0 21 4.4547431506467916E-4 0.0 0.0 21.733652391937213 0.0 22 4.4547431506467916E-4 0.0 0.0 23.145583233534712 0.0 23 4.4547431506467916E-4 0.0 0.0 24.319408053730143 0.0 24 4.4547431506467916E-4 0.0 0.0 25.215256901325212 0.0 25 4.4547431506467916E-4 0.0 0.0 26.03181132083877 0.0 26 4.4547431506467916E-4 0.0 0.0 26.778871747202235 0.0 27 4.4547431506467916E-4 0.0 0.0 27.59141689788021 0.0 28 4.4547431506467916E-4 0.0 0.0 28.37611990386664 0.0 29 4.4547431506467916E-4 0.0 0.0 29.227050091359356 0.0 30 4.4547431506467916E-4 0.0 0.0 30.274582943233952 0.0 31 4.4547431506467916E-4 0.0 0.0 31.098487688946076 0.0 32 4.4547431506467916E-4 0.0 0.0 31.839014492021928 0.0 33 4.4547431506467916E-4 0.0 0.0 32.60047858790582 0.0 34 4.4547431506467916E-4 0.0 0.0 33.42943204252201 0.0 35 4.4547431506467916E-4 0.0 0.0 34.28815803052836 0.0 36 4.4547431506467916E-4 0.0 0.0 35.028090867850786 0.0 37 4.4547431506467916E-4 0.0 0.0 35.823411011679596 0.0 38 4.4547431506467916E-4 0.0 0.0 36.74739898684292 0.0 39 4.4547431506467916E-4 0.0 0.0 38.484451832718456 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGCGC 65 0.0 45.000004 34 TCGAACA 25 3.8911632E-5 45.000004 38 TTTACGT 35 1.2121382E-7 45.0 26 ACGGGTA 20 7.033718E-4 45.0 5 CTTTACG 80 0.0 45.0 1 TCATCGG 55 1.8189894E-12 44.999996 44 TTTCGCG 470 0.0 41.648937 1 CTTTGCG 465 0.0 40.64516 1 GATAACG 45 1.9286745E-8 40.0 17 AGACACG 180 0.0 40.0 24 CGACCAA 175 0.0 39.857143 29 TGGGCGA 1285 0.0 39.74708 6 ATCGGCG 40 3.4588084E-7 39.375 20 CGTTTGG 705 0.0 39.255318 2 TCAAGCG 195 0.0 39.23077 17 TTGGGAC 2855 0.0 38.9317 5 CCGATAG 35 6.249091E-6 38.571426 12 AACGGGA 35 6.249091E-6 38.571426 4 TCTTGCG 410 0.0 38.414635 1 TTTGGGC 2270 0.0 38.061672 4 >>END_MODULE