SRR2933975.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933975.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	796479
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	6502	0.8163429293176594	No Hit
CTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGCT	5670	0.7118831758276113	No Hit
TCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	4430	0.5561979662991742	No Hit
GCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	3647	0.457890289637266	No Hit
TCCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTG	1850	0.2322722884093617	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTG	1556	0.1953598274405226	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1469	0.18443675225586612	No Hit
GCCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTG	1144	0.1436321610488161	No Hit
TGCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTG	1109	0.13923782045728764	No Hit
TTCCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCT	950	0.11927495891291547	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTTAG	30	2.1646592E-6	45.000004	1
TAATACG	20	7.031982E-4	45.0	36
CGTCTAT	20	7.031982E-4	45.0	21
TCTAGCG	45	3.8380676E-10	45.0	1
TATTGCG	40	6.8102963E-9	45.0	1
GCGCTTA	25	3.8897233E-5	45.0	16
CGTCCGA	20	7.031982E-4	45.0	13
CGATAAG	20	7.031982E-4	45.0	32
CGAATAT	100	0.0	42.75	14
CATTTCG	55	6.002665E-11	40.909092	13
TTTTTCG	365	0.0	40.684933	1
TTCGCAG	50	1.0804797E-9	40.5	1
TTGGGCA	910	0.0	40.3022	5
CTTGTTG	430	0.0	40.2907	1
TCGTTTG	275	0.0	40.090908	1
TTTGGGC	1800	0.0	40.000004	4
TTCTGCG	295	0.0	39.66102	1
CGTTTGG	460	0.0	39.619564	2
CGGGAAT	325	0.0	39.46154	6
TTGTGCG	160	0.0	39.375	1