##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933974.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 761260 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.27685810367023 33.0 31.0 34.0 30.0 34.0 2 32.502820324199355 34.0 31.0 34.0 31.0 34.0 3 32.56678532958516 34.0 31.0 34.0 31.0 34.0 4 35.97524236134829 37.0 35.0 37.0 35.0 37.0 5 36.01945064761054 37.0 35.0 37.0 35.0 37.0 6 35.62598323831543 37.0 35.0 37.0 35.0 37.0 7 35.97884559808738 37.0 35.0 37.0 35.0 37.0 8 35.95188503270893 37.0 35.0 37.0 35.0 37.0 9 37.77239970575099 39.0 38.0 39.0 35.0 39.0 10 37.46908152273862 39.0 37.0 39.0 35.0 39.0 11 37.45874996715971 39.0 37.0 39.0 35.0 39.0 12 37.31191708483304 39.0 37.0 39.0 35.0 39.0 13 37.208654073509706 39.0 37.0 39.0 34.0 39.0 14 38.393657882983476 40.0 38.0 41.0 34.0 41.0 15 38.44700627906366 40.0 38.0 41.0 34.0 41.0 16 38.51988282584137 40.0 38.0 41.0 34.0 41.0 17 38.473747471297585 40.0 38.0 41.0 34.0 41.0 18 38.44196989202112 40.0 38.0 41.0 34.0 41.0 19 38.484248482778554 40.0 38.0 41.0 34.0 41.0 20 38.4250689646113 40.0 38.0 41.0 34.0 41.0 21 38.343057562462235 40.0 37.0 41.0 34.0 41.0 22 38.34345427317868 40.0 37.0 41.0 34.0 41.0 23 38.27479704700102 40.0 37.0 41.0 34.0 41.0 24 38.22322465386333 40.0 37.0 41.0 34.0 41.0 25 38.1076084386412 40.0 37.0 41.0 34.0 41.0 26 38.06100412474056 40.0 37.0 41.0 34.0 41.0 27 38.03457688568952 40.0 37.0 41.0 34.0 41.0 28 37.963854662007726 40.0 37.0 41.0 34.0 41.0 29 37.97759766702572 40.0 37.0 41.0 34.0 41.0 30 37.88991014896356 40.0 37.0 41.0 33.0 41.0 31 37.80023119564932 40.0 36.0 41.0 33.0 41.0 32 37.744023067020464 40.0 36.0 41.0 33.0 41.0 33 37.695546856527336 40.0 36.0 41.0 33.0 41.0 34 37.67210282951948 40.0 36.0 41.0 33.0 41.0 35 37.677474187531196 40.0 36.0 41.0 33.0 41.0 36 37.58454010456349 40.0 36.0 41.0 33.0 41.0 37 37.490212279641646 40.0 36.0 41.0 33.0 41.0 38 37.451950713291126 40.0 36.0 41.0 33.0 41.0 39 37.435107584793634 40.0 36.0 41.0 33.0 41.0 40 37.308609410713814 39.0 35.0 41.0 32.0 41.0 41 37.19741612589654 39.0 35.0 41.0 32.0 41.0 42 37.23505898116281 39.0 35.0 41.0 32.0 41.0 43 37.138545306465595 39.0 35.0 41.0 32.0 41.0 44 37.01625594409269 39.0 35.0 41.0 32.0 41.0 45 37.03987074061425 39.0 35.0 41.0 32.0 41.0 46 36.93292173501826 39.0 35.0 41.0 31.0 41.0 47 36.85778052176654 39.0 35.0 41.0 31.0 41.0 48 36.84936552557602 39.0 35.0 41.0 31.0 41.0 49 36.86378241336731 39.0 35.0 41.0 32.0 41.0 50 36.801580274807556 39.0 35.0 41.0 31.0 41.0 51 35.90705015369256 38.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 7.0 10 24.0 11 11.0 12 9.0 13 7.0 14 12.0 15 22.0 16 17.0 17 42.0 18 82.0 19 172.0 20 301.0 21 501.0 22 774.0 23 1241.0 24 1756.0 25 2620.0 26 3773.0 27 4872.0 28 5975.0 29 7359.0 30 9279.0 31 12107.0 32 16183.0 33 23087.0 34 42044.0 35 56870.0 36 56462.0 37 89835.0 38 175346.0 39 250354.0 40 114.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.530909281979877 4.335706591703229 54.12881275779628 17.00457136852061 2 19.76525759924336 6.1701652523447965 51.9194493339989 22.145127814412945 3 20.169718624385887 5.9745684785749935 51.33725665344298 22.518456243596145 4 19.807949977668603 4.595276252528702 50.73995743898274 24.856816330819957 5 19.252554974647296 5.744160996243071 48.70399075217403 26.299293276935607 6 21.795313033654732 7.275963534140767 51.588287838583405 19.340435593621102 7 79.62181120773455 2.1652260725639074 12.107295799069963 6.105666920631585 8 79.24900822320889 4.4292357407456056 9.309040275333 7.012715760712503 9 72.95720253264325 6.2928565798807234 12.587552216062845 8.162388671413183 10 34.196595118619136 32.221317289756456 19.193048367180726 14.389039224443687 11 28.06163465832961 24.805060032052122 27.11911830386465 20.01418700575362 12 26.138113128234767 21.3388329874156 31.53508656700733 20.987967317342303 13 23.02091269737015 23.95791188293093 32.78840343640806 20.23277198329086 14 18.889998160943698 26.833933215984025 30.783832067887452 23.492236555184824 15 16.52878123111683 26.00491290754801 35.84570317631295 21.6206026850222 16 18.636077030186797 25.391193547539604 31.709928276804245 24.262801145469354 17 17.742689751201954 25.74534324672254 30.265480913222813 26.246486088852695 18 18.986154533273783 25.02193731445235 32.30276121167538 23.689146940598484 19 21.035782781178572 25.556183170007618 30.28479100438746 23.123243044426346 20 23.43561989333473 26.302445944880855 30.782781178572368 19.479152983212042 21 23.410529910937132 27.361216929826863 29.130257730604527 20.097995428631478 22 20.723143209941412 25.09536820534377 28.928881065601765 25.252607519113052 23 20.200982581509603 26.698237133173947 28.403567769224708 24.697212516091742 24 22.235504295510076 23.657094816488453 28.910490502587816 25.196910385413656 25 18.859916454299448 26.83445866064157 27.468013556472165 26.837611328586817 26 18.186427764495704 26.44707458686914 27.597798386884904 27.768699261750257 27 19.125397367522265 27.366996821059818 27.905314872711028 25.60229093870688 28 16.344350156319788 26.651341197488378 30.46830255103381 26.536006095158026 29 17.891390589286182 24.243753776633476 28.136641883193654 29.728213750886688 30 19.08414996190526 25.358090534114496 27.298689015579434 28.259070488400813 31 19.108714499645323 29.8402648241074 24.728213750886688 26.322806925360588 32 18.716075979297482 27.224864041194863 26.68838504584505 27.370674933662613 33 18.29900428237396 25.915718676930354 27.28620970496283 28.499067335732864 34 17.53303733284292 25.452801933636337 29.068255261014635 27.945905472506112 35 16.756036045503507 22.792869715997163 28.55817985970628 31.89291437879305 36 17.89848409216299 25.133594304179912 28.077397998055854 28.890523605601242 37 16.834195938312796 27.67254288942017 29.796915639860234 25.6963455324068 38 16.74723484748969 27.58912855003547 28.167117673331056 27.496518929143786 39 18.598245014843812 24.84880329979245 29.312324304442633 27.240627380921108 40 20.047684102671887 24.066810288206394 30.040327877466304 25.84517773165541 41 16.334498068990882 25.634211701652525 29.66844442109135 28.36284580826525 42 18.383994955731286 22.493103538869768 31.30178913905893 27.821112366340017 43 20.019047368835878 22.45146204975961 29.88138086856002 27.648109712844494 44 18.597325486693116 23.38189317710112 27.958516144287103 30.062265191918662 45 18.885925964847754 22.183879357906626 26.110921367206995 32.819273310038625 46 19.722827943146886 23.798964874024644 28.716470062790638 27.761737120037832 47 15.415889446444053 24.092294354097156 33.06097785250768 27.43083834695111 48 16.35446496597746 22.47379344770512 31.988019861808052 29.183721724509365 49 18.02879436723327 20.94921577384862 33.76389144313375 27.25809841578436 50 18.80605837690145 21.116832619604338 30.493392533431418 29.583716470062793 51 16.73672595433886 20.705278091585004 28.21309408086593 34.344901873210205 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 134.0 1 453.5 2 773.0 3 1827.0 4 2881.0 5 1958.0 6 1035.0 7 1112.0 8 1189.0 9 1207.5 10 1226.0 11 1236.5 12 1247.0 13 1279.0 14 1311.0 15 1293.5 16 1276.0 17 1214.5 18 1153.0 19 1332.5 20 1512.0 21 1602.5 22 1693.0 23 2075.5 24 2458.0 25 3063.5 26 5069.5 27 6470.0 28 7642.0 29 8814.0 30 10406.0 31 11998.0 32 13161.0 33 14324.0 34 16637.5 35 18951.0 36 19724.5 37 20498.0 38 23375.0 39 26252.0 40 30103.5 41 33955.0 42 38600.0 43 43245.0 44 49293.5 45 55342.0 46 70166.5 47 84991.0 48 95089.0 49 105187.0 50 99604.5 51 94022.0 52 76523.0 53 59024.0 54 49726.0 55 40428.0 56 35693.0 57 30958.0 58 27699.0 59 24440.0 60 22268.0 61 20096.0 62 17514.0 63 14932.0 64 12230.0 65 9528.0 66 7782.5 67 6037.0 68 4813.0 69 3589.0 70 2935.5 71 2282.0 72 1946.5 73 1611.0 74 1497.0 75 1042.0 76 701.0 77 527.5 78 354.0 79 287.0 80 220.0 81 137.0 82 54.0 83 30.5 84 7.0 85 5.5 86 4.0 87 3.0 88 2.0 89 2.5 90 3.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 761260.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.190819525732742 #Duplication Level Percentage of deduplicated Percentage of total 1 66.0297040745505 19.274611749777435 2 13.828523436360376 8.073318638763226 3 5.942009042077814 5.203563407026967 4 3.173794405261856 3.7058263878311655 5 1.8278002685266803 2.6677493883824086 6 1.1977526920240278 2.097802960160037 7 0.8262136927170418 1.6882498355654665 8 0.6055923617356976 1.4142189870071207 9 0.44509852920775855 1.169351175354549 >10 5.745345557666867 39.433444615924394 >50 0.28544256044270694 5.1544842471911165 >100 0.07999664107576045 4.158190331574552 >500 0.006817895546229584 1.1548464788138129 >1k 0.004999790067235028 3.3104979886125285 >5k 9.090527394972779E-4 1.4938438080152483 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTTCTGC 5999 0.7880356251477812 Illumina PCR Primer Index 11 (95% over 22bp) CTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTTCTGCT 5260 0.6909597246669994 Illumina PCR Primer Index 11 (95% over 23bp) TCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTTCTGC 4995 0.6561490161048787 RNA PCR Primer, Index 14 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTTCTGC 4804 0.6310590337072748 RNA PCR Primer, Index 14 (95% over 23bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGC 2353 0.3090928197987547 No Hit GAATCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTTC 2305 0.3027874839082574 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCG 2094 0.27507027822294616 No Hit TCCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTTCTG 1856 0.2438063210992302 Illumina PCR Primer Index 11 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1684 0.22121220082494808 No Hit CGCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTTCTG 1388 0.18232929616688123 Illumina PCR Primer Index 11 (95% over 21bp) TGCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTTCTG 1264 0.16604051178309645 RNA PCR Primer, Index 14 (95% over 22bp) GCCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTTCTG 1189 0.15618842445419437 RNA PCR Primer, Index 14 (95% over 22bp) TTCCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTTCT 1019 0.13385702650868297 RNA PCR Primer, Index 14 (95% over 21bp) TTCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTTCTG 791 0.10390668102882065 RNA PCR Primer, Index 14 (95% over 22bp) CGTTCTGTCTCTTATACACATCTGACGCCCACCATTTCGTATGCCGTCTTC 788 0.10351259753566455 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.3136116438536112E-4 0.0 0.0 0.7294485458319102 0.0 2 1.3136116438536112E-4 0.0 0.0 2.97927120825999 0.0 3 1.3136116438536112E-4 0.0 0.0 4.226676825263379 0.0 4 1.3136116438536112E-4 0.0 0.0 5.490371226650553 0.0 5 1.3136116438536112E-4 0.0 0.0 7.744660168667735 0.0 6 1.3136116438536112E-4 0.0 0.0 8.855056091217193 0.0 7 1.3136116438536112E-4 0.0 0.0 9.959672122533695 0.0 8 1.3136116438536112E-4 0.0 0.0 11.678532958516143 0.0 9 1.3136116438536112E-4 0.0 0.0 12.392743609279353 0.0 10 1.3136116438536112E-4 0.0 0.0 14.071407928959882 0.0 11 1.3136116438536112E-4 0.0 0.0 16.62375535296745 0.0 12 1.3136116438536112E-4 0.0 0.0 19.418201402937235 0.0 13 1.3136116438536112E-4 0.0 0.0 20.252082074455508 0.0 14 1.3136116438536112E-4 0.0 0.0 20.54396658171978 0.0 15 1.3136116438536112E-4 0.0 0.0 21.051940204397972 0.0 16 1.3136116438536112E-4 0.0 0.0 22.062895725507712 0.0 17 1.3136116438536112E-4 0.0 0.0 23.460972598061108 0.0 18 1.3136116438536112E-4 0.0 0.0 24.973070961301 0.0 19 1.3136116438536112E-4 0.0 0.0 26.007671492000107 0.0 20 1.3136116438536112E-4 0.0 0.0 27.147755037700655 0.0 21 1.3136116438536112E-4 0.0 0.0 28.592465123610857 0.0 22 1.3136116438536112E-4 0.0 0.0 30.06423560938444 0.0 23 1.3136116438536112E-4 0.0 0.0 31.38927567453958 0.0 24 1.3136116438536112E-4 0.0 0.0 32.41231642277277 0.0 25 1.3136116438536112E-4 0.0 0.0 33.32356882011402 0.0 26 1.3136116438536112E-4 0.0 0.0 34.14536426450884 0.0 27 1.3136116438536112E-4 0.0 0.0 34.97569818458871 0.0 28 1.3136116438536112E-4 0.0 0.0 35.78291253973675 0.0 29 1.3136116438536112E-4 0.0 0.0 36.61167012584399 0.0 30 1.3136116438536112E-4 0.0 0.0 37.598061109213674 0.0 31 1.3136116438536112E-4 0.0 0.0 38.47581640963666 0.0 32 1.3136116438536112E-4 0.0 0.0 39.31179885978509 0.0 33 1.3136116438536112E-4 0.0 0.0 40.12768305178257 0.0 34 1.3136116438536112E-4 0.0 0.0 40.90048078186165 0.0 35 1.3136116438536112E-4 0.0 0.0 41.702046606941124 0.0 36 1.3136116438536112E-4 0.0 0.0 42.473136641883194 0.0 37 1.3136116438536112E-4 0.0 0.0 43.26471901846938 0.0 38 1.3136116438536112E-4 0.0 0.0 44.02503743793185 0.0 39 1.3136116438536112E-4 0.0 0.0 44.76552032157213 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATTGCG 65 0.0 45.000004 1 GTCAACG 35 1.2112105E-7 45.000004 1 CGAGTTG 20 7.031784E-4 45.0 6 GATCGAG 25 3.88956E-5 45.0 11 TACGCGG 25 3.88956E-5 45.0 2 TGATTCG 20 7.031784E-4 45.0 1 CGCACTT 80 0.0 45.0 35 GGCGATA 25 3.88956E-5 45.0 8 CGATATT 25 3.88956E-5 45.0 12 CGAGACT 30 2.164532E-6 44.999996 26 TACGTTG 30 2.164532E-6 44.999996 1 TTTACGT 80 0.0 42.1875 26 CGTCCGG 60 3.6379788E-12 41.249996 2 CGGTAGT 55 6.002665E-11 40.909092 12 TGGGACG 220 0.0 40.909092 6 CGCTAGA 50 1.0804797E-9 40.5 24 GCCAACG 45 1.9268555E-8 40.000004 9 TTACACG 130 0.0 39.807693 34 CGTTTGG 425 0.0 39.70588 2 TCTTGCG 250 0.0 39.600002 1 >>END_MODULE