SRR2933971.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933971.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	919362
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC	6674	0.7259382049725788	TruSeq Adapter, Index 27 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC	5121	0.5570167137645454	TruSeq Adapter, Index 27 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGCT	5068	0.5512518463891264	TruSeq Adapter, Index 20 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC	5027	0.5467922320043682	TruSeq Adapter, Index 27 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTG	2030	0.22080529758680476	No Hit
CGCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTG	1544	0.1679425514650377	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1412	0.15358476856776765	No Hit
GCCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTG	1283	0.13955329891816282	No Hit
TGCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTG	1253	0.13629016644151054	No Hit
TTCCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCT	1142	0.12421657627789706	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTCGAT	30	2.1650249E-6	45.000004	12
AGCGTCA	25	3.890195E-5	45.0	35
ACGCCCG	20	7.03255E-4	45.0	20
GGTCGAC	20	7.03255E-4	45.0	9
TAGCGAT	20	7.03255E-4	45.0	14
TATTGCG	75	0.0	45.0	1
ACGGAAC	20	7.03255E-4	45.0	10
GGAACGT	20	7.03255E-4	45.0	8
GGACGTA	25	3.890195E-5	45.0	8
CGACTCA	20	7.03255E-4	45.0	10
TCGACGT	20	7.03255E-4	45.0	26
AATACGG	20	7.03255E-4	45.0	33
ATACCGG	20	7.03255E-4	45.0	2
CGCCCGT	20	7.03255E-4	45.0	21
AGTCGAG	20	7.03255E-4	45.0	29
TGGGCGA	1165	0.0	42.875538	6
TTGGGCG	875	0.0	41.657143	5
TGTTTCG	180	0.0	41.25	1
TTTGGGA	6970	0.0	40.480633	4
TTTTTCG	585	0.0	40.384617	1