Basic Statistics
Measure | Value |
---|---|
Filename | SRR2933971.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 919362 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC | 6674 | 0.7259382049725788 | TruSeq Adapter, Index 27 (95% over 21bp) |
TCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC | 5121 | 0.5570167137645454 | TruSeq Adapter, Index 27 (95% over 21bp) |
CTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGCT | 5068 | 0.5512518463891264 | TruSeq Adapter, Index 20 (95% over 22bp) |
GCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC | 5027 | 0.5467922320043682 | TruSeq Adapter, Index 27 (95% over 21bp) |
TCCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTG | 2030 | 0.22080529758680476 | No Hit |
CGCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTG | 1544 | 0.1679425514650377 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1412 | 0.15358476856776765 | No Hit |
GCCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTG | 1283 | 0.13955329891816282 | No Hit |
TGCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTG | 1253 | 0.13629016644151054 | No Hit |
TTCCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCT | 1142 | 0.12421657627789706 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATTCGAT | 30 | 2.1650249E-6 | 45.000004 | 12 |
AGCGTCA | 25 | 3.890195E-5 | 45.0 | 35 |
ACGCCCG | 20 | 7.03255E-4 | 45.0 | 20 |
GGTCGAC | 20 | 7.03255E-4 | 45.0 | 9 |
TAGCGAT | 20 | 7.03255E-4 | 45.0 | 14 |
TATTGCG | 75 | 0.0 | 45.0 | 1 |
ACGGAAC | 20 | 7.03255E-4 | 45.0 | 10 |
GGAACGT | 20 | 7.03255E-4 | 45.0 | 8 |
GGACGTA | 25 | 3.890195E-5 | 45.0 | 8 |
CGACTCA | 20 | 7.03255E-4 | 45.0 | 10 |
TCGACGT | 20 | 7.03255E-4 | 45.0 | 26 |
AATACGG | 20 | 7.03255E-4 | 45.0 | 33 |
ATACCGG | 20 | 7.03255E-4 | 45.0 | 2 |
CGCCCGT | 20 | 7.03255E-4 | 45.0 | 21 |
AGTCGAG | 20 | 7.03255E-4 | 45.0 | 29 |
TGGGCGA | 1165 | 0.0 | 42.875538 | 6 |
TTGGGCG | 875 | 0.0 | 41.657143 | 5 |
TGTTTCG | 180 | 0.0 | 41.25 | 1 |
TTTGGGA | 6970 | 0.0 | 40.480633 | 4 |
TTTTTCG | 585 | 0.0 | 40.384617 | 1 |