FastQCFastQC Report
Sat 14 Jan 2017
SRR2933971.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2933971.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences919362
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC66740.7259382049725788TruSeq Adapter, Index 27 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC51210.5570167137645454TruSeq Adapter, Index 27 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGCT50680.5512518463891264TruSeq Adapter, Index 20 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC50270.5467922320043682TruSeq Adapter, Index 27 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTG20300.22080529758680476No Hit
CGCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTG15440.1679425514650377No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14120.15358476856776765No Hit
GCCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTG12830.13955329891816282No Hit
TGCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTG12530.13629016644151054No Hit
TTCCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCT11420.12421657627789706No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTCGAT302.1650249E-645.00000412
AGCGTCA253.890195E-545.035
ACGCCCG207.03255E-445.020
GGTCGAC207.03255E-445.09
TAGCGAT207.03255E-445.014
TATTGCG750.045.01
ACGGAAC207.03255E-445.010
GGAACGT207.03255E-445.08
GGACGTA253.890195E-545.08
CGACTCA207.03255E-445.010
TCGACGT207.03255E-445.026
AATACGG207.03255E-445.033
ATACCGG207.03255E-445.02
CGCCCGT207.03255E-445.021
AGTCGAG207.03255E-445.029
TGGGCGA11650.042.8755386
TTGGGCG8750.041.6571435
TGTTTCG1800.041.251
TTTGGGA69700.040.4806334
TTTTTCG5850.040.3846171