##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933971.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 919362 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.39394928221962 33.0 31.0 34.0 31.0 34.0 2 32.6154811706379 34.0 31.0 34.0 31.0 34.0 3 32.67472334075152 34.0 31.0 34.0 31.0 34.0 4 36.06584022398141 37.0 35.0 37.0 35.0 37.0 5 36.102872426748114 37.0 35.0 37.0 35.0 37.0 6 35.76684483369989 37.0 35.0 37.0 35.0 37.0 7 36.07790293703677 37.0 35.0 37.0 35.0 37.0 8 36.07897324448911 37.0 36.0 37.0 35.0 37.0 9 37.93001777319489 39.0 38.0 39.0 35.0 39.0 10 37.570508678844675 39.0 37.0 39.0 35.0 39.0 11 37.49815741786152 39.0 37.0 39.0 35.0 39.0 12 37.35023418414074 39.0 37.0 39.0 35.0 39.0 13 37.301782105416585 39.0 37.0 39.0 34.0 39.0 14 38.52681315956065 40.0 38.0 41.0 35.0 41.0 15 38.56870960513922 40.0 38.0 41.0 35.0 41.0 16 38.61681579182085 40.0 38.0 41.0 35.0 41.0 17 38.57089046534445 40.0 38.0 41.0 35.0 41.0 18 38.49810738316354 40.0 38.0 41.0 34.0 41.0 19 38.55413101694436 40.0 38.0 41.0 34.0 41.0 20 38.51387483929073 40.0 38.0 41.0 34.0 41.0 21 38.436019761530275 40.0 38.0 41.0 34.0 41.0 22 38.43379974373533 40.0 38.0 41.0 34.0 41.0 23 38.3935990393338 40.0 37.0 41.0 34.0 41.0 24 38.37166970137987 40.0 37.0 41.0 34.0 41.0 25 38.28250351874452 40.0 37.0 41.0 34.0 41.0 26 38.233109482445435 40.0 37.0 41.0 34.0 41.0 27 38.19546489848395 40.0 37.0 41.0 34.0 41.0 28 38.153739223505 40.0 37.0 41.0 34.0 41.0 29 38.14538342894311 40.0 37.0 41.0 34.0 41.0 30 38.04012565235457 40.0 37.0 41.0 34.0 41.0 31 38.00536132665914 40.0 37.0 41.0 34.0 41.0 32 37.94108849397735 40.0 37.0 41.0 34.0 41.0 33 37.860397754094684 40.0 37.0 41.0 33.0 41.0 34 37.85467748286312 40.0 37.0 41.0 33.0 41.0 35 37.791296573058275 40.0 37.0 41.0 33.0 41.0 36 37.689330209427844 40.0 36.0 41.0 33.0 41.0 37 37.62743293718905 40.0 36.0 41.0 33.0 41.0 38 37.626637820575574 40.0 36.0 41.0 33.0 41.0 39 37.59331253630235 40.0 36.0 41.0 33.0 41.0 40 37.504702173898856 40.0 36.0 41.0 33.0 41.0 41 37.422566954039866 40.0 36.0 41.0 33.0 41.0 42 37.39288985187554 40.0 36.0 41.0 33.0 41.0 43 37.25437749221743 39.0 35.0 41.0 32.0 41.0 44 37.1180481681862 39.0 35.0 41.0 32.0 41.0 45 37.13013481087972 39.0 35.0 41.0 32.0 41.0 46 37.060337494914954 39.0 35.0 41.0 32.0 41.0 47 36.98774693755017 39.0 35.0 41.0 32.0 41.0 48 36.948707908310325 39.0 35.0 41.0 32.0 41.0 49 36.92239944657273 39.0 35.0 41.0 32.0 41.0 50 36.82776207848486 39.0 35.0 41.0 31.0 41.0 51 35.87843199958232 38.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 13.0 10 11.0 11 21.0 12 8.0 13 12.0 14 9.0 15 15.0 16 16.0 17 34.0 18 91.0 19 184.0 20 350.0 21 566.0 22 894.0 23 1354.0 24 1980.0 25 2992.0 26 4288.0 27 5556.0 28 6652.0 29 8334.0 30 10762.0 31 13741.0 32 18516.0 33 26184.0 34 50192.0 35 67496.0 36 62909.0 37 100817.0 38 201390.0 39 333740.0 40 232.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.0378240562477 4.249359882179164 56.54203676027506 16.170779301298076 2 18.491627889775735 4.424481325092836 55.314881406888695 21.76900937824274 3 20.096001357463113 4.3124471100611075 54.31755935094119 21.273992181534588 4 19.51385852362834 4.511389420054343 51.961251389550576 24.013500666766735 5 18.445508950772382 5.291821937387014 51.63352411781214 24.62914499402847 6 21.473695889105706 5.742460532412695 53.35243353543 19.431410043051596 7 82.65786491066632 2.1877127834302486 9.861947742021098 5.292474563882345 8 83.94245139564175 2.7690942196871307 7.568291924182205 5.720162460488904 9 78.35520719803516 5.54308313808924 10.189783784842096 5.911925879033504 10 35.03766742588883 36.703605326302366 15.941816172519637 12.316911075289168 11 26.499463758563003 24.471862008653826 29.967956039079276 19.06071819370389 12 25.600361990162746 21.483485286535664 32.55964462311908 20.35650810018252 13 23.82804597101033 22.46927760773232 33.82845930112404 19.874217120133313 14 19.13729303582267 25.46037360691436 31.828594177266407 23.573739179996565 15 17.053347865149963 26.452257108734102 35.34102997513493 21.15336505098101 16 20.253175571755193 25.404247728315944 32.09160265488458 22.25097404504428 17 20.432321544723404 26.49435151768291 29.427254987697992 23.64607194989569 18 19.66080825616025 26.153245402790198 32.234201544114285 21.951744796935266 19 21.61052991095999 26.838068138556952 29.948050930971696 21.603351019511358 20 23.672720865121683 27.488519212236312 30.45960133222822 18.379158590413788 21 24.643067692595515 26.89593435447626 29.776083849452117 18.684914103476107 22 22.10609096308092 25.02169983096974 29.82992553531688 23.04228367063246 23 20.444068821639355 25.265455826975664 30.55923564384867 23.731239707536314 24 22.911432058318702 23.26733104043891 30.696722292198288 23.1245146090441 25 21.152277340155457 25.3605217531288 28.01866946860975 25.46853143810599 26 20.09698029720611 27.794709809628852 28.14734565927241 23.960964233892636 27 19.690937846028007 27.85083568822727 29.498935131101785 22.959291334642938 28 17.01342887785225 26.453997446054984 30.96919385399875 25.563379822094017 29 19.460778235341465 25.229887682980152 28.878722418372742 26.43061166330564 30 20.364557160291593 27.47775087506336 29.20829879851462 22.949393166130424 31 20.02181947916055 27.386600707882202 28.76222858895626 23.82935122400099 32 20.887637296298955 27.21920201182994 28.69566068643255 23.197500005438553 33 22.186581564171675 26.98795469031785 27.891624844185426 22.93383890132505 34 19.47143780143186 24.476104080873476 31.529038615909727 24.523419501784932 35 19.802972061059734 24.773484220579054 30.28904827478186 25.134495443579354 36 21.733985089660006 27.466547453560185 28.38435784815992 22.41510960861989 37 19.022322001561953 28.804214226822516 29.83525531836208 22.338208453253454 38 19.261944696430785 27.248461433037257 28.249372934709072 25.240220935822887 39 20.676947709389772 25.8822966361455 29.56582934687316 23.87492630759157 40 21.982635784380907 24.36994350429972 31.46714786993589 22.18027284138348 41 19.53202329441504 24.66003598147411 30.22911540829401 25.57882531581684 42 21.224718881137136 24.29282480676817 29.101594366528094 25.3808619455666 43 22.652448110755067 23.54643763827524 28.320509222700093 25.480605028269604 44 20.321701353764894 23.701980286328997 28.13407558720069 27.842242772705422 45 20.57720462668677 23.183577306871506 27.81461491773643 28.424603148705295 46 20.91689671750627 24.466314683443517 30.162329963605195 24.454458635445015 47 17.757640624694083 24.658513186318338 32.83048461868122 24.753361570306364 48 18.066006643737722 22.70204772440018 32.384958264535626 26.846987367326474 49 20.120692393203115 21.471302925289496 33.11459468631507 25.293409995192317 50 20.422205834045783 21.515790298054522 30.799619736295387 27.262384131604307 51 18.13061666677544 21.361009047578648 29.694396766453256 30.813977519192658 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 117.0 1 560.5 2 1004.0 3 1919.0 4 2834.0 5 1980.5 6 1127.0 7 1181.5 8 1236.0 9 1248.5 10 1261.0 11 1332.5 12 1404.0 13 1426.0 14 1448.0 15 1491.0 16 1534.0 17 1579.5 18 1625.0 19 1961.5 20 2298.0 21 2936.5 22 3575.0 23 4244.5 24 4914.0 25 6024.0 26 8769.0 27 10404.0 28 12611.5 29 14819.0 30 16573.0 31 18327.0 32 19734.0 33 21141.0 34 24341.5 35 27542.0 36 29869.0 37 32196.0 38 35634.5 39 39073.0 40 43528.0 41 47983.0 42 51356.5 43 54730.0 44 61312.0 45 67894.0 46 78027.0 47 88160.0 48 100975.0 49 113790.0 50 108691.5 51 103593.0 52 84273.0 53 64953.0 54 55710.5 55 46468.0 56 41742.0 57 37016.0 58 33574.0 59 30132.0 60 28252.5 61 26373.0 62 21864.5 63 17356.0 64 13873.5 65 10391.0 66 8634.5 67 6878.0 68 5066.0 69 3254.0 70 2745.0 71 2236.0 72 1834.5 73 1433.0 74 1125.0 75 649.5 76 482.0 77 358.5 78 235.0 79 177.0 80 119.0 81 79.5 82 40.0 83 27.0 84 14.0 85 7.5 86 1.0 87 1.0 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 919362.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.24927401221995 #Duplication Level Percentage of deduplicated Percentage of total 1 66.00700043566573 18.646498420318423 2 13.86864915573714 7.835585403595226 3 6.011546136819232 5.094654421683263 4 3.0906389823811056 3.4923322994452985 5 1.7807454917660128 2.5152383671461727 6 1.1141050213604922 1.8883594816081621 7 0.7354911639084927 1.4543963995972309 8 0.5630795083610638 1.2725269857886226 9 0.4254007033275217 1.0815534929961221 >10 5.901071907889839 41.37943719336474 >50 0.4131085755800799 7.061845289083829 >100 0.08059704742829486 4.105403936624427 >500 0.004672292604538794 0.8115115939561924 >1k 0.002336146302269397 0.9529596706473912 >5k 0.001557430868179598 2.4076970441448973 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC 6674 0.7259382049725788 TruSeq Adapter, Index 27 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC 5121 0.5570167137645454 TruSeq Adapter, Index 27 (95% over 21bp) CTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGCT 5068 0.5512518463891264 TruSeq Adapter, Index 20 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC 5027 0.5467922320043682 TruSeq Adapter, Index 27 (95% over 21bp) TCCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTG 2030 0.22080529758680476 No Hit CGCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTG 1544 0.1679425514650377 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1412 0.15358476856776765 No Hit GCCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTG 1283 0.13955329891816282 No Hit TGCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTG 1253 0.13629016644151054 No Hit TTCCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCT 1142 0.12421657627789706 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5798586411011114 0.0 2 0.0 0.0 0.0 2.5602537411813846 0.0 3 0.0 0.0 0.0 3.655034687098227 0.0 4 0.0 0.0 0.0 4.679875826932155 0.0 5 0.0 0.0 0.0 6.318294643459269 0.0 6 0.0 0.0 0.0 7.223813905730278 0.0 7 0.0 0.0 0.0 8.074838855641195 0.0 8 0.0 0.0 0.0 9.399453098996913 0.0 9 0.0 0.0 0.0 9.960168029568331 0.0 10 0.0 0.0 0.0 11.168179672425008 0.0 11 0.0 0.0 0.0 13.350345130644948 0.0 12 0.0 0.0 0.0 15.42308687981448 0.0 13 0.0 0.0 0.0 16.10345000119648 0.0 14 0.0 0.0 0.0 16.346118286376857 0.0 15 0.0 0.0 0.0 16.72094343686165 0.0 16 0.0 0.0 0.0 17.585891085339615 0.0 17 0.0 0.0 0.0 18.848614582721495 0.0 18 0.0 0.0 0.0 20.192263765524352 0.0 19 0.0 0.0 0.0 21.21046986932242 0.0 20 0.0 0.0 0.0 22.253802093190714 0.0 21 0.0 0.0 0.0 23.61115643239551 0.0 22 0.0 0.0 0.0 25.09163963705265 0.0 23 0.0 0.0 0.0 26.354471905517087 0.0 24 0.0 0.0 0.0 27.343853672438062 0.0 25 0.0 0.0 0.0 28.198468068073293 0.0 26 0.0 0.0 0.0 28.99075663340447 0.0 27 0.0 0.0 0.0 29.73518592241141 0.0 28 0.0 0.0 0.0 30.56054089683933 0.0 29 0.0 0.0 0.0 31.396337895192534 0.0 30 0.0 0.0 0.0 32.32959378351509 0.0 31 1.0877108255507624E-4 0.0 0.0 33.205200998083455 0.0 32 1.0877108255507624E-4 0.0 0.0 33.985633515416126 0.0 33 1.0877108255507624E-4 0.0 0.0 34.77085196038122 0.0 34 1.0877108255507624E-4 0.0 0.0 35.49037267148305 0.0 35 1.0877108255507624E-4 0.0 0.0 36.293538345069734 0.0 36 1.0877108255507624E-4 0.0 0.0 37.05928676625747 0.0 37 1.0877108255507624E-4 0.0 0.0 37.82275099471155 0.0 38 1.0877108255507624E-4 0.0 0.0 38.61145011431841 0.0 39 1.0877108255507624E-4 0.0 0.0 39.42614552265593 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTCGAT 30 2.1650249E-6 45.000004 12 AGCGTCA 25 3.890195E-5 45.0 35 ACGCCCG 20 7.03255E-4 45.0 20 GGTCGAC 20 7.03255E-4 45.0 9 TAGCGAT 20 7.03255E-4 45.0 14 TATTGCG 75 0.0 45.0 1 ACGGAAC 20 7.03255E-4 45.0 10 GGAACGT 20 7.03255E-4 45.0 8 GGACGTA 25 3.890195E-5 45.0 8 CGACTCA 20 7.03255E-4 45.0 10 TCGACGT 20 7.03255E-4 45.0 26 AATACGG 20 7.03255E-4 45.0 33 ATACCGG 20 7.03255E-4 45.0 2 CGCCCGT 20 7.03255E-4 45.0 21 AGTCGAG 20 7.03255E-4 45.0 29 TGGGCGA 1165 0.0 42.875538 6 TTGGGCG 875 0.0 41.657143 5 TGTTTCG 180 0.0 41.25 1 TTTGGGA 6970 0.0 40.480633 4 TTTTTCG 585 0.0 40.384617 1 >>END_MODULE