SRR2933968.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933968.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1582751
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC	9195	0.5809505095874209	No Hit
TCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC	7821	0.4941396340927916	No Hit
CTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGCT	7564	0.4779020831451062	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC	7389	0.466845385028978	No Hit
TCCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTG	3062	0.19346062646619716	No Hit
CGCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTG	2558	0.16161733589174798	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2502	0.15807919249458693	No Hit
TGCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTG	1947	0.12301366418343758	No Hit
GCCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTG	1940	0.12257139625879246	No Hit
TTCCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCT	1868	0.11802235474815685	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCC	1714	0.10829246040596405	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCATA	20	7.034095E-4	45.0	6
ACGGCAT	20	7.034095E-4	45.0	41
TAGGCCG	20	7.034095E-4	45.0	42
ATCGCCC	40	6.8175723E-9	45.0	10
CGTTTTT	1680	0.0	40.044643	1
GGACGTA	45	1.9290383E-8	40.0	8
TTATCCG	40	3.4593177E-7	39.375	1
TTCTGCG	580	0.0	39.181038	1
TTTGGGA	16205	0.0	39.02962	4
TGGGCGA	2175	0.0	38.793102	6
TTTGTCG	455	0.0	38.076923	1
TTGGGAC	5685	0.0	38.07388	5
TACGGGA	280	0.0	37.767857	4
TGGGATG	4075	0.0	37.546013	6
GGGCGAT	3245	0.0	37.511555	7
CAACGTA	30	1.1401166E-4	37.499996	33
CGTTCCG	30	1.1401166E-4	37.499996	37
TGACACG	30	1.1401166E-4	37.499996	39
ACGGATA	30	1.1401166E-4	37.499996	16
TTGGGAT	8215	0.0	37.41327	5