SRR2933967.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933967.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	557048
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTGC	4482	0.8045985265183612	TruSeq Adapter, Index 14 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTGCT	4275	0.7674383536068705	TruSeq Adapter, Index 21 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTGC	3504	0.6290301733423331	TruSeq Adapter, Index 14 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTGC	2978	0.5346038402435697	TruSeq Adapter, Index 14 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTG	1267	0.22744898105728767	TruSeq Adapter, Index 21 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1106	0.19854662434835058	No Hit
CGCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTG	921	0.16533584179460298	TruSeq Adapter, Index 21 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGC	879	0.1577960965661846	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTC	869	0.15600091913084688	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCG	812	0.14576840774942196	No Hit
GCCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTG	725	0.13015036406198388	No Hit
TGCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTG	678	0.12171303011589665	TruSeq Adapter, Index 21 (95% over 21bp)
TTCCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCT	640	0.11489135586161336	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGGCGC	20	7.03015E-4	45.000004	2
GCGAATA	20	7.03015E-4	45.000004	9
GCGAAGT	20	7.03015E-4	45.000004	11
GCGCGAC	70	0.0	45.000004	9
TGGTTAG	40	6.8048394E-9	45.000004	1
ACGATGC	20	7.03015E-4	45.000004	38
TCGTGTA	20	7.03015E-4	45.000004	30
AACATCG	20	7.03015E-4	45.000004	25
AGGCACC	20	7.03015E-4	45.000004	6
TGCGAAG	20	7.03015E-4	45.000004	10
TACTCGA	80	0.0	45.000004	23
CGTCGTA	20	7.03015E-4	45.000004	18
TTCGGCA	20	7.03015E-4	45.000004	1
TTACGCG	20	7.03015E-4	45.000004	1
CTTTCGT	20	7.03015E-4	45.000004	15
CCGTTCA	20	7.03015E-4	45.000004	29
CCCATCG	20	7.03015E-4	45.000004	22
CTGGACG	80	0.0	45.000004	26
GGTAGCG	20	7.03015E-4	45.000004	1
AGCGTTG	25	3.8882077E-5	45.0	16