SRR2933966.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933966.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1012538
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	6683	0.6600246114219911	No Hit
CTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGCT	5043	0.4980553816251835	No Hit
GCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	3593	0.3548508796706889	No Hit
TCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	3385	0.3343084407696304	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1655	0.1634506556790955	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTG	1433	0.14152555262123495	No Hit
TCCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTG	1288	0.1272051024257855	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGATA	20	7.032888E-4	45.0	14
CGTTGAC	25	3.890475E-5	45.0	31
ACGATAA	20	7.032888E-4	45.0	45
GCGCTAA	20	7.032888E-4	45.0	45
TACGGGA	190	0.0	42.63158	4
TCTACGG	70	0.0	41.785713	2
GCGCGAC	60	3.6379788E-12	41.250004	9
TTCGTTG	300	0.0	41.250004	1
TTCGACG	55	6.184564E-11	40.909092	25
TACGGAT	45	1.9279469E-8	40.0	43
CGTTTCG	45	1.9279469E-8	40.0	32
CATACGA	210	0.0	39.642857	18
TGCGTAT	40	3.4576806E-7	39.375	16
TCGGGTC	75	0.0	39.000004	5
CGCTTGG	325	0.0	38.76923	2
TCTAGCG	35	6.2475538E-6	38.571426	1
GCATCCG	35	6.2475538E-6	38.571426	9
ACACGCG	440	0.0	38.352272	36
CTTTGCG	405	0.0	38.333332	1
CGGTAGG	270	0.0	38.333332	31