SRR2933964.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933964.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1095090
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	10472	0.9562684345578902	No Hit
CTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGCT	9359	0.8546329525427134	No Hit
TCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	6414	0.5857052844971646	No Hit
GCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	6187	0.564976394634231	No Hit
TCCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTG	2498	0.22810910518770147	No Hit
CGCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTG	2399	0.2190687523399903	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2233	0.20391018089837365	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	2224	0.20308833063949083	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	2220	0.20272306385776515	No Hit
GCCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTG	1668	0.1523162479796181	No Hit
TGCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTG	1521	0.13889269375119853	No Hit
TTTTTTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCA	1485	0.1356052927156672	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTC	1373	0.12537782282734752	No Hit
TTCCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCT	1306	0.11925960423344201	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCC	1274	0.11633746997963638	No Hit
TTTTTTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATAC	1120	0.1022746988831968	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGT	20	7.0331385E-4	45.000004	9
ACGTTAT	20	7.0331385E-4	45.000004	35
ATAGCGA	20	7.0331385E-4	45.000004	31
TAAACGA	20	7.0331385E-4	45.000004	22
TAGCCGG	20	7.0331385E-4	45.000004	21
TACGCGC	40	6.8139343E-9	45.000004	34
ATCGGTC	20	7.0331385E-4	45.000004	10
CGGTAAT	20	7.0331385E-4	45.000004	23
ATACCTC	20	7.0331385E-4	45.000004	10
TTTAGCG	50	2.1827873E-11	45.0	1
CCGCCGT	25	3.8906852E-5	45.0	33
TTCGTAG	65	0.0	41.538464	1
CGTTTTT	1445	0.0	41.262978	1
TCTTGCG	355	0.0	40.563377	1
GTTTGCG	240	0.0	40.312504	1
CGGGTAC	45	1.9281288E-8	40.0	6
TCGGGTA	90	0.0	40.0	5
GTTACGG	45	1.9281288E-8	40.0	2
TCATACG	45	1.9281288E-8	40.0	31
CGGGTAT	130	0.0	39.807693	6