SRR2933962.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933962.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1112610
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC	4031	0.36230125560618726	TruSeq Adapter, Index 16 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC	3393	0.30495861083398496	TruSeq Adapter, Index 16 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGCT	3340	0.30019503689522836	TruSeq Adapter, Index 13 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC	3246	0.2917464340604524	TruSeq Adapter, Index 16 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTG	1364	0.12259461985781181	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1240	0.11144965441619256	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTAT	20	7.033189E-4	45.0	18
CGTATGG	35	1.2118835E-7	45.0	2
GTTTACG	20	7.033189E-4	45.0	1
GCAACGC	20	7.033189E-4	45.0	35
TAGCGCG	20	7.033189E-4	45.0	2
TCGTCCA	20	7.033189E-4	45.0	23
ATTTCGC	20	7.033189E-4	45.0	12
ATTCGCG	30	2.1654396E-6	44.999996	1
TTATCCG	30	2.1654396E-6	44.999996	1
TATTGCG	25	3.890726E-5	44.999996	1
ACGGACG	25	3.890726E-5	44.999996	28
TTACCGG	30	2.1654396E-6	44.999996	2
GCGTAGC	30	2.1654396E-6	44.999996	37
TCGTGCG	80	0.0	42.1875	1
TCGCGCG	50	1.0822987E-9	40.499996	1
CTTTGCG	330	0.0	40.227272	1
CGGGCGA	500	0.0	39.600002	6
ACTGCCG	40	3.4580808E-7	39.375	10
ACGTCGC	40	3.4580808E-7	39.375	24
GCCCGCG	40	3.4580808E-7	39.375	1