SRR2933961.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933961.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	754154
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTGC	5946	0.7884331316945875	TruSeq Adapter, Index 21 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTGCT	4508	0.5977558960106292	TruSeq Adapter, Index 15 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTGC	3566	0.4728477207572989	TruSeq Adapter, Index 21 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTGC	3016	0.39991831907011033	TruSeq Adapter, Index 21 (95% over 22bp)
TCCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTG	1466	0.19439000522439714	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1312	0.17396977275198436	No Hit
CGCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTG	1271	0.16853321735348484	No Hit
GCCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTG	1032	0.13684207734759743	TruSeq Adapter, Index 21 (95% over 21bp)
TGCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTG	910	0.12066501006425745	No Hit
TTCCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCT	842	0.11164828403747776	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTCGGA	20	7.031741E-4	45.000004	8
GGCCGTA	20	7.031741E-4	45.000004	8
CGTTCAT	20	7.031741E-4	45.000004	17
CCCCGTA	20	7.031741E-4	45.000004	16
TAGATGG	20	7.031741E-4	45.000004	2
CCGCGAA	20	7.031741E-4	45.000004	30
CCTATCG	20	7.031741E-4	45.000004	33
TCGAAAG	20	7.031741E-4	45.000004	28
GTACGAA	20	7.031741E-4	45.000004	28
GCCGATC	25	3.8895247E-5	45.0	9
TCATGCG	35	1.2111923E-7	45.0	1
TTGCGGA	25	3.8895247E-5	45.0	3
AACGACG	25	3.8895247E-5	45.0	11
TGTTGCG	80	0.0	42.187504	1
TCTAGCG	60	3.6379788E-12	41.249996	1
TCGTTTG	280	0.0	40.98214	1
CGTTTTT	855	0.0	40.000004	1
TGTTTCG	210	0.0	39.642857	1
TTCGTTG	245	0.0	39.489796	1
CGCATGG	40	3.4561162E-7	39.375004	2