##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933961.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 754154 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.452635668576974 33.0 31.0 34.0 31.0 34.0 2 32.68578698780355 34.0 31.0 34.0 31.0 34.0 3 32.73462979709714 34.0 31.0 34.0 31.0 34.0 4 36.09626018028148 37.0 35.0 37.0 35.0 37.0 5 36.13946620981921 37.0 35.0 37.0 35.0 37.0 6 35.807747489239595 37.0 35.0 37.0 35.0 37.0 7 36.11227547689199 37.0 35.0 37.0 35.0 37.0 8 36.11052119328413 37.0 37.0 37.0 35.0 37.0 9 37.974302330823676 39.0 39.0 39.0 35.0 39.0 10 37.65743203642757 39.0 37.0 39.0 35.0 39.0 11 37.60718235267598 39.0 37.0 39.0 35.0 39.0 12 37.439268372242275 39.0 37.0 39.0 35.0 39.0 13 37.37015914521437 39.0 37.0 39.0 35.0 39.0 14 38.55092328622536 40.0 38.0 41.0 35.0 41.0 15 38.61478159633178 40.0 38.0 41.0 35.0 41.0 16 38.698801571031915 40.0 38.0 41.0 35.0 41.0 17 38.67876587540476 40.0 38.0 41.0 35.0 41.0 18 38.643391137619105 40.0 38.0 41.0 35.0 41.0 19 38.65991296207406 40.0 38.0 41.0 35.0 41.0 20 38.61880729930492 40.0 38.0 41.0 35.0 41.0 21 38.54948591401756 40.0 38.0 41.0 34.0 41.0 22 38.540139016699506 40.0 38.0 41.0 34.0 41.0 23 38.50197970175853 40.0 38.0 41.0 34.0 41.0 24 38.489048655844826 40.0 38.0 41.0 34.0 41.0 25 38.380155777202006 40.0 37.0 41.0 34.0 41.0 26 38.331197606854836 40.0 37.0 41.0 34.0 41.0 27 38.33908459015002 40.0 37.0 41.0 34.0 41.0 28 38.26361194132763 40.0 37.0 41.0 34.0 41.0 29 38.19453453803865 40.0 37.0 41.0 34.0 41.0 30 38.163831259928344 40.0 37.0 41.0 34.0 41.0 31 38.05286453429936 40.0 37.0 41.0 34.0 41.0 32 37.885502165340235 40.0 36.0 41.0 34.0 41.0 33 37.85158071163184 40.0 37.0 41.0 34.0 41.0 34 37.840651909291736 40.0 37.0 41.0 33.0 41.0 35 37.75545445625164 40.0 36.0 41.0 33.0 41.0 36 37.716211808198324 40.0 36.0 41.0 33.0 41.0 37 37.66457116185819 40.0 36.0 41.0 33.0 41.0 38 37.56826854992482 40.0 36.0 41.0 33.0 41.0 39 37.54505180639498 40.0 36.0 41.0 33.0 41.0 40 37.469649434996036 40.0 36.0 41.0 33.0 41.0 41 37.32028471638419 39.0 35.0 41.0 33.0 41.0 42 37.27774565937461 39.0 35.0 41.0 33.0 41.0 43 37.231402339575205 39.0 35.0 41.0 33.0 41.0 44 37.15877658939686 39.0 35.0 41.0 32.0 41.0 45 37.204850733404584 39.0 35.0 41.0 33.0 41.0 46 37.105312708014544 39.0 35.0 41.0 32.0 41.0 47 37.01723255462412 39.0 35.0 41.0 32.0 41.0 48 36.918022048547115 39.0 35.0 41.0 32.0 41.0 49 36.9114053628304 39.0 35.0 41.0 32.0 41.0 50 36.82418312440165 39.0 35.0 41.0 32.0 41.0 51 35.74602667359717 38.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 6.0 9 13.0 10 16.0 11 21.0 12 7.0 13 9.0 14 18.0 15 20.0 16 18.0 17 49.0 18 73.0 19 167.0 20 239.0 21 468.0 22 747.0 23 1054.0 24 1531.0 25 2362.0 26 3316.0 27 4053.0 28 5050.0 29 6122.0 30 8069.0 31 10327.0 32 14245.0 33 20913.0 34 40944.0 35 53912.0 36 53623.0 37 86737.0 38 174199.0 39 265645.0 40 181.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.118161542602703 4.790666097375337 56.715074109532004 16.376098250489953 2 19.976158715593897 4.881363753291768 53.3987753164473 21.74370221466703 3 20.507349957700946 4.669603290574604 52.04043206029537 22.78261469142907 4 19.59745622246915 5.022846792564914 51.00244777591845 24.377249209047488 5 18.76526544976225 5.716339103153998 50.26387183519546 25.254523611888285 6 22.16152138687854 5.814462298151306 52.706211198243324 19.31780511672682 7 82.33729450483588 2.315840000848633 9.895724215478536 5.451141278836948 8 82.88943637506398 3.1339752888667296 8.041858824590204 5.934729511479088 9 77.21791570421956 5.397703917237063 10.924691773828688 6.459688604714688 10 35.21601688779745 32.87962405556425 17.45677938458193 14.44757967205637 11 28.35256459556006 26.12105750284425 26.297414056015082 19.22896384558061 12 28.202197429172294 21.170874914142203 30.651962331301036 19.97496532538447 13 25.166875730951503 23.069028341691485 31.28618292815526 20.477912999201756 14 19.262113573620244 26.371006452263067 30.54468981136479 23.822190162751905 15 16.987777032277226 26.268507493164527 34.90997859853558 21.83373687602267 16 19.69743580223668 25.131471821405178 32.5808787064711 22.590213669887053 17 19.449608435412397 24.967181769240764 30.312243918350894 25.270965876995945 18 20.647507007852507 24.42856498805284 31.734897646899707 23.18903035719495 19 22.10967521222456 26.56645724878473 29.481909530414214 21.841958008576498 20 24.87171055248663 26.19518029474086 29.88660141032203 19.04650774245048 21 24.356828976575077 26.571496007446754 29.34427185959366 19.727403156384504 22 21.604075560164105 25.001922684226297 28.958806821948833 24.435194933660764 23 21.022231533612498 25.989386783070834 29.50392094983253 23.48446073348414 24 22.702524948485323 23.303728416212074 29.240446911373542 24.753299723929064 25 20.1216197222318 25.599811179149086 28.37285222912031 25.9057168694988 26 19.81226646016596 26.321281860203623 29.53269491377093 24.333756765859494 27 20.2670807288697 26.315447508068644 29.37781938436977 24.039652378691887 28 19.308523192875725 24.807532679001902 31.585458672897047 24.298485455225325 29 20.183145617473354 23.47027264988318 32.32429981144435 24.022281921199117 30 23.66784502899938 23.31035836182 29.760897641595747 23.26089896758487 31 23.689060854944746 26.011530801401307 27.70057574447659 22.598832599177356 32 22.639540465210022 26.84929072841886 28.56021449200031 21.950954314370804 33 24.048801703630822 26.170649495991533 26.943701153875733 22.83684764650191 34 22.07639288527277 24.24239611538227 30.20921456360372 23.47199643574124 35 19.77977972668712 23.573832400278988 30.745179366548474 25.901208506485414 36 21.38077899208915 25.322944650562086 29.177064631361766 24.119211725987 37 22.156615227128675 25.624739774634893 29.682664283422216 22.535980714814215 38 22.13102363708208 25.53112494265097 29.99705630415008 22.34079511611687 39 23.755492909936166 23.125648077183175 30.33863110187044 22.78022791101022 40 25.676055553640236 22.141366352230445 30.63445927489611 21.548118819233206 41 20.57245602357078 24.12995223787184 30.44046706640819 24.85712467214919 42 20.663816674048004 24.755951702172236 29.617823415376698 24.96240820840306 43 22.269987297024215 23.728840528592304 29.536142485487048 24.465029688896433 44 21.78613386655776 22.761531464395865 29.339896095492435 26.11243857355394 45 22.926086714384596 20.854361310819804 28.29395587638599 27.92559609840961 46 22.380044394115792 22.032900442084774 30.735234448136588 24.851820715662846 47 20.17015092408182 23.093426541528654 32.99830008194613 23.7381224524434 48 20.15317826332553 21.909716052689504 32.803512279985256 25.133593403999715 49 22.11047080569751 20.760348682099412 33.477910347223514 23.651270164979564 50 22.118426740427022 20.61568326893446 31.086621565356676 26.179268425281837 51 20.645650623082286 20.362684544536 29.254369797150183 29.737295035231533 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 153.0 1 476.5 2 800.0 3 1631.5 4 2463.0 5 1687.0 6 911.0 7 975.5 8 1040.0 9 1088.5 10 1137.0 11 1175.5 12 1214.0 13 1103.5 14 993.0 15 1094.0 16 1195.0 17 1305.5 18 1416.0 19 1706.0 20 1996.0 21 1990.5 22 1985.0 23 2368.5 24 2752.0 25 3560.5 26 5434.0 27 6499.0 28 8039.5 29 9580.0 30 10303.5 31 11027.0 32 13209.0 33 15391.0 34 18299.0 35 21207.0 36 22512.0 37 23817.0 38 26290.0 39 28763.0 40 32231.5 41 35700.0 42 39151.0 43 42602.0 44 48471.0 45 54340.0 46 62282.5 47 70225.0 48 81707.0 49 93189.0 50 90727.5 51 88266.0 52 73451.0 53 58636.0 54 50413.0 55 42190.0 56 37695.0 57 33200.0 58 30348.5 59 27497.0 60 26513.0 61 25529.0 62 21334.0 63 17139.0 64 14071.5 65 11004.0 66 8675.0 67 6346.0 68 5233.0 69 4120.0 70 3151.0 71 2182.0 72 1829.0 73 1476.0 74 1189.0 75 693.0 76 484.0 77 320.0 78 156.0 79 154.0 80 152.0 81 119.5 82 87.0 83 52.0 84 17.0 85 9.5 86 2.0 87 3.0 88 4.0 89 2.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 754154.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.915759327815994 #Duplication Level Percentage of deduplicated Percentage of total 1 66.358136958706 19.851540546989003 2 13.654002740212764 8.169397196750904 3 5.690263037477599 5.1068561862344115 4 2.994519590958849 3.583333095422197 5 1.768945910731599 2.64596800646854 6 1.1302354317888907 2.0287110696699986 7 0.7742492252367911 1.6213577437352287 8 0.5816321745441617 1.3919974520781926 9 0.4775358141847895 1.285726183880834 >10 6.300242015937313 43.430287416430886 >50 0.19417698931218477 3.6593721153861316 >100 0.06890151223527329 3.540114592592832 >500 0.003579299336897313 0.7250482342650146 >1k 0.003131886919785149 2.1644369570425606 >5k 4.4741241711216415E-4 0.7958532030533094 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTGC 5946 0.7884331316945875 TruSeq Adapter, Index 21 (95% over 22bp) CTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTGCT 4508 0.5977558960106292 TruSeq Adapter, Index 15 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTGC 3566 0.4728477207572989 TruSeq Adapter, Index 21 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTGC 3016 0.39991831907011033 TruSeq Adapter, Index 21 (95% over 22bp) TCCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTG 1466 0.19439000522439714 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1312 0.17396977275198436 No Hit CGCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTG 1271 0.16853321735348484 No Hit GCCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTG 1032 0.13684207734759743 TruSeq Adapter, Index 21 (95% over 21bp) TGCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTG 910 0.12066501006425745 No Hit TTCCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCT 842 0.11164828403747776 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.3259891215852465E-4 0.0 0.0 0.6209607056383709 0.0 2 1.3259891215852465E-4 0.0 0.0 2.3938081611978457 0.0 3 1.3259891215852465E-4 0.0 0.0 3.4145545869941683 0.0 4 1.3259891215852465E-4 0.0 0.0 4.413156994460017 0.0 5 1.3259891215852465E-4 0.0 0.0 6.0142888587742025 0.0 6 1.3259891215852465E-4 0.0 0.0 6.933597116769254 0.0 7 1.3259891215852465E-4 0.0 0.0 7.785279929563458 0.0 8 1.3259891215852465E-4 0.0 0.0 9.038339649461516 0.0 9 1.3259891215852465E-4 0.0 0.0 9.619255483628013 0.0 10 1.3259891215852465E-4 0.0 0.0 10.815430270210063 0.0 11 1.3259891215852465E-4 0.0 0.0 13.150762311146 0.0 12 1.3259891215852465E-4 0.0 0.0 15.290245758823795 0.0 13 1.3259891215852465E-4 0.0 0.0 15.979892700960281 0.0 14 1.3259891215852465E-4 0.0 0.0 16.223344303683334 0.0 15 1.3259891215852465E-4 0.0 0.0 16.61384809999019 0.0 16 1.3259891215852465E-4 0.0 0.0 17.546946644849726 0.0 17 1.3259891215852465E-4 0.0 0.0 18.78767466591704 0.0 18 1.3259891215852465E-4 0.0 0.0 20.134747014535492 0.0 19 1.3259891215852465E-4 0.0 0.0 21.056707250773716 0.0 20 1.3259891215852465E-4 0.0 0.0 22.14653770980463 0.0 21 1.3259891215852465E-4 0.0 0.0 23.591865852332546 0.0 22 1.3259891215852465E-4 0.0 0.0 25.089835762987402 0.0 23 1.3259891215852465E-4 0.0 0.0 26.42457641277511 0.0 24 2.651978243170493E-4 0.0 0.0 27.405808362748193 0.0 25 2.651978243170493E-4 0.0 0.0 28.33347035220923 0.0 26 2.651978243170493E-4 0.0 0.0 29.11805811545122 0.0 27 2.651978243170493E-4 0.0 0.0 29.865650782200984 0.0 28 2.651978243170493E-4 0.0 0.0 30.673841151807192 0.0 29 2.651978243170493E-4 0.0 0.0 31.503645144095238 0.0 30 2.651978243170493E-4 0.0 0.0 32.48792686904797 0.0 31 2.651978243170493E-4 0.0 0.0 33.36307968929423 0.0 32 3.9779673647557395E-4 0.0 0.0 34.196331253298396 0.0 33 3.9779673647557395E-4 0.0 0.0 34.96898511444612 0.0 34 3.9779673647557395E-4 0.0 0.0 35.722809930067335 0.0 35 3.9779673647557395E-4 0.0 0.0 36.56680200595634 0.0 36 3.9779673647557395E-4 0.0 0.0 37.41742402745328 0.0 37 3.9779673647557395E-4 0.0 0.0 38.26128350443013 0.0 38 3.9779673647557395E-4 0.0 0.0 39.0596615545366 0.0 39 3.9779673647557395E-4 0.0 0.0 39.93799674867467 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTCGGA 20 7.031741E-4 45.000004 8 GGCCGTA 20 7.031741E-4 45.000004 8 CGTTCAT 20 7.031741E-4 45.000004 17 CCCCGTA 20 7.031741E-4 45.000004 16 TAGATGG 20 7.031741E-4 45.000004 2 CCGCGAA 20 7.031741E-4 45.000004 30 CCTATCG 20 7.031741E-4 45.000004 33 TCGAAAG 20 7.031741E-4 45.000004 28 GTACGAA 20 7.031741E-4 45.000004 28 GCCGATC 25 3.8895247E-5 45.0 9 TCATGCG 35 1.2111923E-7 45.0 1 TTGCGGA 25 3.8895247E-5 45.0 3 AACGACG 25 3.8895247E-5 45.0 11 TGTTGCG 80 0.0 42.187504 1 TCTAGCG 60 3.6379788E-12 41.249996 1 TCGTTTG 280 0.0 40.98214 1 CGTTTTT 855 0.0 40.000004 1 TGTTTCG 210 0.0 39.642857 1 TTCGTTG 245 0.0 39.489796 1 CGCATGG 40 3.4561162E-7 39.375004 2 >>END_MODULE