SRR2933958.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933958.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	330492
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGC	2643	0.7997167858828655	No Hit
CTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGCT	2240	0.6777773743388645	No Hit
TCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGC	1864	0.5640076007891265	No Hit
GCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGC	1650	0.4992556552049671	No Hit
TCCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTG	804	0.2432736647180567	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	760	0.2299601805792576	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTG	575	0.17398303135930673	No Hit
TTCCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCT	492	0.14886895900657202	No Hit
GCCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTG	463	0.14009416264236352	No Hit
TGCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTG	435	0.1316219454631277	No Hit
TTCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTG	343	0.10378466044563862	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTT	20	7.025984E-4	45.0	34
CTTAACG	20	7.025984E-4	45.0	31
CTTCGAT	20	7.025984E-4	45.0	18
AGCGTCA	20	7.025984E-4	45.0	38
GGTACAT	35	1.2084092E-7	45.0	9
ACGCCTC	20	7.025984E-4	45.0	41
TCCGCGG	25	3.884754E-5	45.0	2
TCCGCAT	20	7.025984E-4	45.0	40
GGTCGTA	20	7.025984E-4	45.0	42
GATCGCC	20	7.025984E-4	45.0	21
CTATCCC	20	7.025984E-4	45.0	40
GACACGA	20	7.025984E-4	45.0	37
GGCAATG	20	7.025984E-4	45.0	8
CGCATAG	20	7.025984E-4	45.0	13
TAGCGAT	20	7.025984E-4	45.0	21
CCCAGTT	20	7.025984E-4	45.0	33
ACATTAC	25	3.884754E-5	45.0	27
ACCTGAG	20	7.025984E-4	45.0	24
ACTTCGA	20	7.025984E-4	45.0	13
CAATTTG	40	6.7902874E-9	45.0	34