SRR2933956.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933956.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	540161
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC	4041	0.7481102856370601	TruSeq Adapter, Index 14 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGCT	4000	0.7405199560871666	TruSeq Adapter, Index 15 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC	3141	0.5814932955174477	TruSeq Adapter, Index 14 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC	3025	0.5600182167909198	TruSeq Adapter, Index 14 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTG	1236	0.22882066643093446	TruSeq Adapter, Index 15 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	856	0.15847127060265365	No Hit
GCCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTG	852	0.15773075064656647	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTG	841	0.15569432076732678	TruSeq Adapter, Index 15 (95% over 21bp)
TGCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTG	775	0.14347574149188852	TruSeq Adapter, Index 15 (95% over 21bp)
TTCCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCT	623	0.1153359831605762	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGGT	30	2.1633568E-6	45.000004	4
TCGATCA	30	2.1633568E-6	45.000004	17
CCTCGCG	30	2.1633568E-6	45.000004	1
GCCGATG	30	2.1633568E-6	45.000004	9
GCCGATC	20	7.029961E-4	45.000004	9
TCGTGCG	20	7.029961E-4	45.000004	1
TCTACGG	20	7.029961E-4	45.000004	2
ACGTGTA	20	7.029961E-4	45.000004	28
TCGCTAT	20	7.029961E-4	45.000004	27
TACCTAC	30	2.1633568E-6	45.000004	25
GCGATTA	20	7.029961E-4	45.000004	23
CGGCTAG	30	2.1633568E-6	45.000004	41
CCGCGAG	30	2.1633568E-6	45.000004	11
TTCGCTA	20	7.029961E-4	45.000004	26
TTACACG	20	7.029961E-4	45.000004	34
TACACGC	20	7.029961E-4	45.000004	35
CGCTTCA	20	7.029961E-4	45.000004	27
TCCGCGA	25	3.8880513E-5	45.0	10
ATTACGA	25	3.8880513E-5	45.0	36
TTCCGCG	45	3.8380676E-10	45.0	1