##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933955.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 652333 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.34001039346469 33.0 31.0 34.0 31.0 34.0 2 32.56161347042078 34.0 31.0 34.0 31.0 34.0 3 32.63882097027132 34.0 31.0 34.0 31.0 34.0 4 36.02075780314655 37.0 35.0 37.0 35.0 37.0 5 36.0516346712492 37.0 35.0 37.0 35.0 37.0 6 35.67971266209129 37.0 35.0 37.0 35.0 37.0 7 35.983115985240666 37.0 35.0 37.0 35.0 37.0 8 35.981901881401065 37.0 35.0 37.0 35.0 37.0 9 37.81908319830516 39.0 38.0 39.0 35.0 39.0 10 37.568617561889404 39.0 37.0 39.0 35.0 39.0 11 37.509727393831064 39.0 37.0 39.0 35.0 39.0 12 37.19909156826345 39.0 37.0 39.0 34.0 39.0 13 37.03421412070216 39.0 37.0 39.0 33.0 39.0 14 37.86888751603859 40.0 37.0 41.0 33.0 41.0 15 38.024740431650706 40.0 37.0 41.0 33.0 41.0 16 38.207706800054574 40.0 37.0 41.0 33.0 41.0 17 38.22647328894905 40.0 37.0 41.0 34.0 41.0 18 38.20705222639358 40.0 37.0 41.0 34.0 41.0 19 38.25555966048015 40.0 37.0 41.0 34.0 41.0 20 38.192889214557596 40.0 37.0 41.0 34.0 41.0 21 38.120124231029244 40.0 37.0 41.0 34.0 41.0 22 38.17716258414031 40.0 37.0 41.0 34.0 41.0 23 38.16339660878723 40.0 36.0 41.0 34.0 41.0 24 38.11713036133386 40.0 36.0 41.0 34.0 41.0 25 37.99589473474437 40.0 36.0 41.0 34.0 41.0 26 37.915357647091284 40.0 36.0 41.0 34.0 41.0 27 37.86340105436947 40.0 36.0 41.0 34.0 41.0 28 37.8127183509036 40.0 36.0 41.0 34.0 41.0 29 37.76463861248779 40.0 36.0 41.0 34.0 41.0 30 37.59835850708151 40.0 35.0 41.0 33.0 41.0 31 37.51904778694317 40.0 35.0 41.0 33.0 41.0 32 37.46287095701122 40.0 35.0 41.0 33.0 41.0 33 37.415215848347394 39.0 35.0 41.0 33.0 41.0 34 37.38994194682777 40.0 35.0 41.0 33.0 41.0 35 37.326175434938904 40.0 35.0 41.0 32.0 41.0 36 37.217701695299795 39.0 35.0 41.0 32.0 41.0 37 37.13571136214173 39.0 35.0 41.0 32.0 41.0 38 37.08890244706308 39.0 35.0 41.0 32.0 41.0 39 37.02136638802575 39.0 35.0 41.0 32.0 41.0 40 36.87177254561704 39.0 35.0 41.0 31.0 41.0 41 36.74790482774902 39.0 35.0 41.0 31.0 41.0 42 36.78704741290108 39.0 35.0 41.0 31.0 41.0 43 36.69602948187505 39.0 35.0 41.0 31.0 41.0 44 36.54363645561393 39.0 35.0 41.0 31.0 41.0 45 36.54130175845772 39.0 35.0 41.0 31.0 41.0 46 36.41766091857993 38.0 35.0 40.0 31.0 41.0 47 36.26026431285862 38.0 35.0 40.0 31.0 41.0 48 36.17486774392833 38.0 35.0 40.0 31.0 41.0 49 36.13297809554323 38.0 35.0 40.0 31.0 41.0 50 35.992612668683016 38.0 35.0 40.0 30.0 41.0 51 34.95878332078862 36.0 34.0 39.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 5.0 9 16.0 10 23.0 11 25.0 12 17.0 13 10.0 14 14.0 15 20.0 16 42.0 17 66.0 18 109.0 19 233.0 20 354.0 21 625.0 22 923.0 23 1413.0 24 1905.0 25 2721.0 26 3569.0 27 4554.0 28 5461.0 29 6911.0 30 8950.0 31 11794.0 32 16054.0 33 24774.0 34 48460.0 35 50408.0 36 47516.0 37 76152.0 38 143940.0 39 195152.0 40 115.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.960973919761837 4.721361635851628 52.35316931689796 16.96449512748857 2 20.64589711083143 4.884621811252841 50.71228958216126 23.75719149575447 3 22.18928062814544 5.02979306581148 49.762161350107995 23.01876495593508 4 20.758722922188515 4.626164857519089 49.15326987903417 25.461842341258222 5 18.72816490963971 5.650641620154124 49.27483355893386 26.34635991127231 6 20.976556451996142 6.707463825990713 52.331401293511135 19.984578428502004 7 78.86493554672231 2.41410445278715 12.151769111787997 6.569190888702549 8 78.60203301074758 3.442107022027094 10.158002124681719 7.797857842543608 9 72.29068589202141 5.916456778976382 13.64717100008738 8.145686328914833 10 37.19266080360797 29.457807592134692 19.697608430050295 13.65192317420704 11 31.273138105844716 23.750293178483993 26.218511097859533 18.75805761781176 12 29.183407860709178 20.868329518819376 30.867670346280196 19.08059227419125 13 27.492093761928338 22.36618414214826 30.321783506276702 19.8199385896467 14 19.50368906678031 25.04196476339538 33.242071150777285 22.21227501904702 15 17.741858835901294 25.161995483901627 35.625976303513696 21.470169376683383 16 23.904662189403265 25.871755683063714 27.26690202703221 22.95668010050082 17 23.469455017606037 25.57052916225302 27.326074259618938 23.633941560522004 18 24.319021113449725 23.37272527988006 30.802366276119713 21.505887330550504 19 23.51636357504526 25.087646953319855 28.32893629480649 23.0670531768284 20 23.242730323316465 28.74084248382345 29.44431754947243 18.57210964338766 21 24.172470195436993 26.911408743693787 30.898636126027657 18.01748493484156 22 20.863730640639062 24.445950151226445 31.448661956393437 23.241657251741056 23 21.341707379513224 24.339869361200492 30.814323359388535 23.504099899897753 24 24.05213288305206 24.605377928144062 27.679881287624575 23.662607901179307 25 23.289025696998312 25.602261421697204 24.810181303107463 26.298531578197025 26 21.954584545009986 25.433942480297638 26.419175482460645 26.19229749223173 27 20.839356586283387 26.835220661839887 28.26961076628041 24.055811985596314 28 18.84375004790498 25.816722440839264 26.86787269692013 28.471654814335622 29 23.99480020173746 27.45453625678909 24.95765199675626 23.59301154471719 30 24.375434019128267 27.609825043344426 26.762405090651555 21.252335846875752 31 22.781922729648816 27.421730925769506 27.522906245736458 22.27344009884522 32 25.64549087659217 28.59337179017465 23.798887991256 21.96224934197718 33 23.672725433176 27.045389394680324 24.70486699277823 24.57701817936545 34 19.849984593758098 24.13935827253872 31.109264746686126 24.90139238701706 35 21.27716978904946 27.92500149463541 26.144929046974475 24.65289966934066 36 23.581361053327058 28.460924098581554 24.5006768015722 23.457038046519184 37 20.69295896421 29.090510521466793 27.25264550467323 22.963885009649978 38 22.173951034211054 29.360464670651336 25.053155366967484 23.41242892817012 39 22.91912259536157 25.54232270941375 27.558624199603578 23.9799304956211 40 24.962710762754607 24.74027835476666 27.976815522133634 22.3201953603451 41 19.474869430183663 25.69914445536252 25.817182328657296 29.008803785796516 42 20.67364367585267 24.749935998945325 27.084326563273663 27.492093761928338 43 22.861176730289593 22.450803500666073 27.554638505180634 27.133381263863704 44 22.86424264907647 21.969300955187 27.189794169542242 27.97666222619429 45 22.48452860732172 22.094390441691587 25.601035054182447 29.82004589680424 46 21.723107676600755 23.895157841163943 29.091890184920892 25.289844297314406 47 17.53996808378543 24.77798915584525 32.670430592964024 25.011612167405296 48 17.97655491903675 25.808751051993383 29.85745010600414 26.357243922965722 49 22.912684165909127 21.67604582322219 31.471349755416327 23.939920255452353 50 21.405938378098302 22.37814122541708 28.73593701376444 27.479983382720174 51 19.119069554966558 22.665417815747478 26.79689667700392 31.418615952282043 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 119.0 1 343.0 2 567.0 3 1118.5 4 1670.0 5 1176.5 6 683.0 7 781.0 8 879.0 9 1078.5 10 1278.0 11 1320.5 12 1363.0 13 1303.5 14 1244.0 15 1234.0 16 1224.0 17 1211.0 18 1198.0 19 1224.5 20 1251.0 21 1513.0 22 1775.0 23 2001.0 24 2227.0 25 2722.0 26 3983.5 27 4750.0 28 5502.5 29 6255.0 30 7464.0 31 8673.0 32 10432.0 33 12191.0 34 13716.0 35 15241.0 36 16632.5 37 18024.0 38 18966.5 39 19909.0 40 22125.0 41 24341.0 42 28057.5 43 31774.0 44 36987.0 45 42200.0 46 51642.5 47 61085.0 48 73647.5 49 86210.0 50 83451.5 51 80693.0 52 66619.0 53 52545.0 54 47012.0 55 41479.0 56 38059.0 57 34639.0 58 31195.5 59 27752.0 60 23964.0 61 20176.0 62 17822.5 63 15469.0 64 13393.5 65 11318.0 66 9264.0 67 7210.0 68 5985.0 69 4760.0 70 3939.0 71 3118.0 72 2386.5 73 1655.0 74 1338.0 75 854.5 76 688.0 77 485.5 78 283.0 79 191.5 80 100.0 81 76.5 82 53.0 83 33.5 84 14.0 85 9.0 86 4.0 87 4.5 88 5.0 89 3.0 90 1.0 91 1.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 652333.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.235328833597706 #Duplication Level Percentage of deduplicated Percentage of total 1 71.8513126762154 23.161506912434508 2 11.271357468704814 7.266718288094543 3 3.9307929901657124 3.801312138443775 4 1.9668337571394305 2.5360613168963995 5 1.1750210734880255 1.8938595345146736 6 0.8674845219067778 1.6778189293032764 7 0.7169913777402601 1.6178716982618084 8 0.6092613402911918 1.5711791719908028 9 0.5752832424401076 1.669000004326366 >10 6.851533747509729 41.938757369541186 >50 0.10528456700660987 2.3236473188318345 >100 0.067305202651698 4.068164983727635 >500 0.0067305202651698 1.5182588223526583 >1k 0.002884508685072771 1.238069789912768 >5k 0.001923005790048514 3.7177737213677937 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTGCT 6722 1.030455304269445 TruSeq Adapter, Index 23 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTGC 6661 1.0211042519694695 TruSeq Adapter, Index 20 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTGC 5362 0.8219728267617918 TruSeq Adapter, Index 20 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTGC 5245 0.8040372018585599 TruSeq Adapter, Index 20 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTG 1751 0.26842118979110363 No Hit TCCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTG 1684 0.25815036185506485 No Hit TGCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTG 1228 0.1882474135142634 No Hit GCCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTG 1174 0.17996943278969485 No Hit TTCCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCT 1104 0.16923871703562443 No Hit CGTTCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTC 1048 0.16065414443236814 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 910 0.13949930480291506 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 880 0.1349004266225992 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCC 879 0.13474713068325533 No Hit TTCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTG 856 0.13122132407834647 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGC 768 0.11773128141608658 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCG 743 0.11389888293249001 No Hit GAATCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTC 716 0.10975989257020571 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.1141548871511942 0.0 2 0.0 0.0 0.0 4.037048562620625 0.0 3 0.0 0.0 0.0 5.545020717946202 0.0 4 0.0 0.0 0.0 7.02800563515873 0.0 5 0.0 0.0 0.0 9.405778950321386 0.0 6 0.0 0.0 0.0 10.620036085864122 0.0 7 0.0 0.0 0.0 11.677778067336774 0.0 8 0.0 0.0 0.0 13.107415997657638 0.0 9 0.0 0.0 0.0 13.7615297708379 0.0 10 0.0 0.0 0.0 15.125250447240903 0.0 11 0.0 0.0 0.0 17.373488693657993 0.0 12 0.0 0.0 0.0 19.43823170068048 0.0 13 0.0 0.0 0.0 20.16286160595892 0.0 14 0.0 0.0 0.0 20.488615477064627 0.0 15 0.0 0.0 0.0 20.94421100879459 0.0 16 0.0 0.0 0.0 21.859694358556137 0.0 17 0.0 0.0 0.0 23.132357246988885 0.0 18 0.0 0.0 0.0 24.49776417872467 0.0 19 0.0 0.0 0.0 25.375076839589596 0.0 20 0.0 0.0 0.0 26.327351214793673 0.0 21 0.0 0.0 0.0 27.400269494261366 0.0 22 0.0 0.0 0.0 28.475640508758563 0.0 23 0.0 0.0 0.0 29.382999173734888 0.0 24 0.0 0.0 0.0 30.076203411447835 0.0 25 0.0 0.0 0.0 30.735835838444476 0.0 26 0.0 0.0 0.0 31.319586775465904 0.0 27 0.0 0.0 0.0 32.012791013178855 0.0 28 0.0 0.0 0.0 32.61340450352811 0.0 29 0.0 0.0 0.0 33.285607197550945 0.0 30 0.0 0.0 0.0 33.99030863071468 0.0 31 0.0 0.0 0.0 34.56271566822466 0.0 32 0.0 0.0 0.0 35.11074865137898 0.0 33 0.0 0.0 0.0 35.689287526462714 0.0 34 0.0 0.0 0.0 36.28990101681197 0.0 35 0.0 0.0 0.0 36.87150581068258 0.0 36 0.0 0.0 0.0 37.366498398823914 0.0 37 0.0 0.0 0.0 37.92832801651917 0.0 38 0.0 0.0 0.0 38.52556899620286 0.0 39 0.0 0.0 0.0 39.45484898050535 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAG 20 7.031042E-4 45.0 1 GTTAGCG 25 3.8889448E-5 45.0 1 GTTACGG 20 7.031042E-4 45.0 2 TGCGCGA 20 7.031042E-4 45.0 14 GTTCGTC 20 7.031042E-4 45.0 10 CATACGA 50 2.1827873E-11 45.0 18 GGTTCGT 20 7.031042E-4 45.0 9 CAATACG 20 7.031042E-4 45.0 31 TACACGA 25 3.8889448E-5 45.0 18 AATCGTT 20 7.031042E-4 45.0 22 GATAGCG 20 7.031042E-4 45.0 1 TTACCGG 30 2.1640535E-6 44.999996 2 CGTTTTT 675 0.0 42.666668 1 TACGGGA 95 0.0 40.263157 4 TCTCGTA 45 1.9261279E-8 40.0 28 TTTTGCG 470 0.0 39.734043 1 AGGCACG 125 0.0 39.6 10 ATGGGCG 40 3.4551522E-7 39.375 5 CGCATGG 40 3.4551522E-7 39.375 2 CGGGTAA 75 0.0 39.0 6 >>END_MODULE