SRR2933954.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933954.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1409783
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC	15878	1.1262726249358943	No Hit
CTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGCT	14528	1.0305132066424407	No Hit
TCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC	9336	0.6622295771760618	No Hit
GCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC	7959	0.5645549705167391	No Hit
CGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTG	3742	0.26543092092896564	No Hit
TCCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTG	3380	0.23975321024583218	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2728	0.19350495785521601	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGC	2414	0.1712320264891831	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTC	2361	0.16747258265988454	No Hit
GCCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTG	2222	0.15761290922078078	No Hit
TGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTG	2083	0.14775323578167704	No Hit
GAATCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTC	2063	0.14633457773288513	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCC	1980	0.14044714683039872	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCG	1976	0.14016341522064035	No Hit
TTCCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCT	1940	0.1376098307328149	No Hit
TTCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTG	1633	0.11583342968385915	No Hit
CGTCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCT	1460	0.10356203756180916	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGAT	20	7.0338306E-4	45.0	10
GGCGATA	45	3.8562575E-10	45.0	8
CGATATT	20	7.0338306E-4	45.0	13
TCGTTAG	60	3.6379788E-12	41.249996	1
TTCTTCG	415	0.0	40.66265	1
TTCGTTG	490	0.0	40.408165	1
TAACCTA	125	0.0	39.600002	17
AGGCACG	110	0.0	38.863636	10
TTGGGAC	3110	0.0	38.705788	5
CGTTAGG	105	0.0	38.57143	2
TTACGCG	35	6.2492963E-6	38.571426	1
TTTCGCG	400	0.0	38.25	1
CGTTTTT	1695	0.0	38.23009	1
TTTGGGA	8860	0.0	38.067158	4
TTGTTCG	320	0.0	37.96875	1
TCGTTTG	415	0.0	37.95181	1
TTTGTCG	410	0.0	37.865852	1
GCGATTG	340	0.0	37.72059	9
AGTTTCG	185	0.0	37.7027	1
GGGCGAT	1935	0.0	37.558136	7