Basic Statistics
Measure | Value |
---|---|
Filename | SRR2933954.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1409783 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC | 15878 | 1.1262726249358943 | No Hit |
CTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGCT | 14528 | 1.0305132066424407 | No Hit |
TCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC | 9336 | 0.6622295771760618 | No Hit |
GCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC | 7959 | 0.5645549705167391 | No Hit |
CGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTG | 3742 | 0.26543092092896564 | No Hit |
TCCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTG | 3380 | 0.23975321024583218 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2728 | 0.19350495785521601 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGC | 2414 | 0.1712320264891831 | No Hit |
CGTTCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTC | 2361 | 0.16747258265988454 | No Hit |
GCCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTG | 2222 | 0.15761290922078078 | No Hit |
TGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTG | 2083 | 0.14775323578167704 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTC | 2063 | 0.14633457773288513 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCC | 1980 | 0.14044714683039872 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCG | 1976 | 0.14016341522064035 | No Hit |
TTCCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCT | 1940 | 0.1376098307328149 | No Hit |
TTCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTG | 1633 | 0.11583342968385915 | No Hit |
CGTCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCT | 1460 | 0.10356203756180916 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGAT | 20 | 7.0338306E-4 | 45.0 | 10 |
GGCGATA | 45 | 3.8562575E-10 | 45.0 | 8 |
CGATATT | 20 | 7.0338306E-4 | 45.0 | 13 |
TCGTTAG | 60 | 3.6379788E-12 | 41.249996 | 1 |
TTCTTCG | 415 | 0.0 | 40.66265 | 1 |
TTCGTTG | 490 | 0.0 | 40.408165 | 1 |
TAACCTA | 125 | 0.0 | 39.600002 | 17 |
AGGCACG | 110 | 0.0 | 38.863636 | 10 |
TTGGGAC | 3110 | 0.0 | 38.705788 | 5 |
CGTTAGG | 105 | 0.0 | 38.57143 | 2 |
TTACGCG | 35 | 6.2492963E-6 | 38.571426 | 1 |
TTTCGCG | 400 | 0.0 | 38.25 | 1 |
CGTTTTT | 1695 | 0.0 | 38.23009 | 1 |
TTTGGGA | 8860 | 0.0 | 38.067158 | 4 |
TTGTTCG | 320 | 0.0 | 37.96875 | 1 |
TCGTTTG | 415 | 0.0 | 37.95181 | 1 |
TTTGTCG | 410 | 0.0 | 37.865852 | 1 |
GCGATTG | 340 | 0.0 | 37.72059 | 9 |
AGTTTCG | 185 | 0.0 | 37.7027 | 1 |
GGGCGAT | 1935 | 0.0 | 37.558136 | 7 |