FastQCFastQC Report
Sat 14 Jan 2017
SRR2933954.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2933954.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1409783
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC158781.1262726249358943No Hit
CTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGCT145281.0305132066424407No Hit
TCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC93360.6622295771760618No Hit
GCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC79590.5645549705167391No Hit
CGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTG37420.26543092092896564No Hit
TCCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTG33800.23975321024583218No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT27280.19350495785521601No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGC24140.1712320264891831No Hit
CGTTCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTC23610.16747258265988454No Hit
GCCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTG22220.15761290922078078No Hit
TGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTG20830.14775323578167704No Hit
GAATCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTC20630.14633457773288513No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCC19800.14044714683039872No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCG19760.14016341522064035No Hit
TTCCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCT19400.1376098307328149No Hit
TTCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTG16330.11583342968385915No Hit
CGTCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCT14600.10356203756180916No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGAT207.0338306E-445.010
GGCGATA453.8562575E-1045.08
CGATATT207.0338306E-445.013
TCGTTAG603.6379788E-1241.2499961
TTCTTCG4150.040.662651
TTCGTTG4900.040.4081651
TAACCTA1250.039.60000217
AGGCACG1100.038.86363610
TTGGGAC31100.038.7057885
CGTTAGG1050.038.571432
TTACGCG356.2492963E-638.5714261
TTTCGCG4000.038.251
CGTTTTT16950.038.230091
TTTGGGA88600.038.0671584
TTGTTCG3200.037.968751
TCGTTTG4150.037.951811
TTTGTCG4100.037.8658521
GCGATTG3400.037.720599
AGTTTCG1850.037.70271
GGGCGAT19350.037.5581367