SRR2933953.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933953.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1827466
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA	13954	0.7635709775175024	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACCTGTCTCTT	10836	0.5929522081395769	No Hit
CCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	8064	0.44126675954573163	No Hit
CTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGCT	6307	0.3451226999572085	Illumina Single End Adapter 2 (95% over 21bp)
GCTCAACTTGACCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATG	6158	0.33696933349238783	No Hit
GCTCAACTTGACCCTGCATTAGAACTGTCTCTTATACACATCTGACGCTCC	5849	0.32006067417943757	No Hit
GCTCAACTTGACCCCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTA	5657	0.30955432276168204	No Hit
GCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	5281	0.28897938456857747	No Hit
TCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	4544	0.24865031688688055	No Hit
GCTCAACCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTC	3104	0.16985268125371417	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACCTGTCTCTTATACACATC	3041	0.16640528469476312	No Hit
GCTCCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTC	2857	0.1563366979194141	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGCTGTCTCTTATACACATCTG	2508	0.13723921539443143	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2493	0.13641840668991925	No Hit
GCCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTG	2422	0.13253324548856174	No Hit
TCCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTG	2018	0.11042613104703453	No Hit
CGCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTG	1831	0.10019338253078305	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGATCA	20	7.03438E-4	45.000004	45
ATTGCGA	20	7.03438E-4	45.000004	11
GCGATCG	25	3.8917122E-5	45.0	9
CCGAACA	25	3.8917122E-5	45.0	31
ATACCGC	25	3.8917122E-5	45.0	19
ACTTGAC	6260	0.0	43.634186	6
TCAACTT	6390	0.0	43.485916	3
CTTGACC	6720	0.0	43.45982	7
CTCAACT	6540	0.0	43.279816	2
TTGACCC	6060	0.0	42.846535	8
GCTCAAC	6995	0.0	42.78056	1
CATTAGA	4980	0.0	42.740963	17
CCTGCAT	5340	0.0	42.682583	13
AACTTGA	6375	0.0	42.67059	5
GCATTAG	5140	0.0	42.417316	16
CAACTTG	6475	0.0	42.359074	4
TGCATTA	5120	0.0	42.31934	15
ACCCTGC	5490	0.0	41.80328	11
ATTAGAA	5075	0.0	41.71921	18
CCCTGCA	5515	0.0	41.613777	12