SRR2933950.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933950.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1830589
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGC	6711	0.36660331729295875	No Hit
CTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGCT	6330	0.3457903439821828	No Hit
TCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGC	5638	0.3079883032182538	No Hit
GCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGC	5036	0.2751027128426971	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3602	0.19676726998796562	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	2426	0.13252565157990132	No Hit
TCCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTG	2274	0.12422231314620595	No Hit
CGCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTG	2092	0.11428015791638647	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	1926	0.10521203831116652	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCATA	20	7.0343824E-4	45.000004	24
GTACGGA	20	7.0343824E-4	45.000004	9
TCGTACG	80	0.0	42.187504	30
GTTTACG	70	0.0	41.785713	1
CGGTCGT	55	6.184564E-11	40.909092	6
CTCCGCG	50	1.0822987E-9	40.5	1
ACACGCG	305	0.0	39.836067	36
CGTTTTT	2260	0.0	39.723454	1
CTACGAA	125	0.0	39.600002	11
TACGAAT	120	0.0	39.375004	12
CCCGATC	40	3.4597178E-7	39.375004	41
CCGATAA	70	0.0	38.571426	15
AAGCGTA	70	0.0	38.571426	11
CGCGTAA	35	6.2503204E-6	38.571426	13
TGGGCGA	1820	0.0	38.324173	6
TTTGGGA	13885	0.0	38.27512	4
TTGTTCG	485	0.0	38.041237	1
TATGCGG	160	0.0	37.968754	2
TTGGGAC	4660	0.0	37.70923	5
GTATTCG	30	1.1401861E-4	37.500004	1