SRR2933949.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933949.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1147974
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGC	8064	0.7024549336483231	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCG	7043	0.6135156371137325	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTC	6664	0.5805009521121558	No Hit
CCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	6165	0.5370330686931933	No Hit
GCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	5560	0.4843315266722069	No Hit
CTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGCT	3930	0.34234224816938363	No Hit
TCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	3751	0.32674956053011656	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACATGAGT	1614	0.14059551871383846	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCT	1532	0.13345249979529153	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTC	1515	0.13197163001949522	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1501	0.13075209020413356	No Hit
GAACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCT	1310	0.11411408272312788	No Hit
TCCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTG	1295	0.11280743292095466	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGACATGAGTCGTA	1260	0.10975858338255048	No Hit
CGCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTG	1231	0.10723239376501559	No Hit
GCCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTG	1180	0.10278978443762664	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGAAC	20	7.033281E-4	45.000004	26
CGTCGAC	20	7.033281E-4	45.000004	31
CCGCGAA	20	7.033281E-4	45.000004	35
ACGCCCG	45	3.8562575E-10	45.0	28
CTACGGC	75	0.0	42.0	6
TACGGGA	210	0.0	40.714287	4
TATTGCG	50	1.0822987E-9	40.5	1
TACGGCT	1090	0.0	40.458717	7
TTACACG	180	0.0	40.0	34
CCCGCAT	45	1.9283107E-8	40.0	23
ACACGCG	170	0.0	39.705883	36
CGTTTTT	1100	0.0	39.272728	1
GTTTGCG	235	0.0	39.255318	1
TTGTGCG	345	0.0	38.47826	1
TTTGGGA	5845	0.0	38.41745	4
TTGGGAC	2135	0.0	37.728336	5
TCTCGCA	30	1.1399209E-4	37.500004	11
TTCTACG	90	0.0	37.5	1
ATACGGC	2210	0.0	37.46606	6
TGGGCGA	1265	0.0	37.35178	6