SRR2933943.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933943.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1949011
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC	8064	0.4137483061922175	No Hit
GCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC	7196	0.3692128982340274	No Hit
CTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGCT	6550	0.3360678826338076	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGC	5778	0.2964580497493344	No Hit
GAATCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTC	5627	0.28871053062296725	No Hit
TCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC	5434	0.2788080724018489	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCG	4745	0.24345680963319344	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4303	0.220778641064622	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	3455	0.17726939458012295	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	3451	0.17706416228538474	No Hit
TCCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTG	2567	0.13170782514824186	No Hit
CGCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTG	2446	0.12549954823241122	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTAACG	25	3.8918086E-5	45.0	43
CGTTTTT	2385	0.0	40.188683	1
CGTTAGG	85	0.0	39.705883	2
AAACACG	335	0.0	38.955223	40
AGACACG	360	0.0	38.750004	24
ACGACCA	350	0.0	38.571426	28
TTTGGGA	12560	0.0	38.38973	4
CGAATAT	165	0.0	38.181816	14
TTGGGAC	4900	0.0	37.97449	5
TCAAGCG	380	0.0	37.894737	17
AACACGT	345	0.0	37.826084	41
TTGTTCG	485	0.0	37.57732	1
TTCGTTG	905	0.0	37.54144	1
TCTTGCG	625	0.0	37.44	1
TTCGGGC	535	0.0	37.429905	4
GCGAGAC	385	0.0	37.4026	21
TTCGGGA	2525	0.0	37.33663	4
TCCGGGC	375	0.0	37.2	4
GGGCGAT	3310	0.0	37.114803	7
TTGGGAT	7965	0.0	36.864407	5