SRR2933942.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933942.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1125451
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	6021	0.5349855302452083	No Hit
CTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGCT	5434	0.48282866157655907	No Hit
GCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	4677	0.41556673724577975	No Hit
TCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	4382	0.3893550230085539	No Hit
TCCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTG	1904	0.1691766234158573	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1572	0.13967733824040318	No Hit
CGCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTG	1315	0.11684204821000649	No Hit
GCCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTG	1227	0.10902296057313914	No Hit
TGCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTG	1225	0.10884525403593759	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGATCG	25	3.8907536E-5	45.0	27
ACGGGTA	25	3.8907536E-5	45.0	5
TAGCCGT	20	7.033225E-4	45.0	44
ACGATCC	20	7.033225E-4	45.0	35
CGGATTA	20	7.033225E-4	45.0	6
TTCGGTA	20	7.033225E-4	45.0	35
ACCGTAA	25	3.8907536E-5	45.0	20
TATCGCG	30	2.1654614E-6	44.999996	32
TATTGCG	70	0.0	41.785713	1
CTACGAA	110	0.0	40.909092	11
CGTTTTT	960	0.0	40.07812	1
TTGGGAC	2540	0.0	39.419292	5
TTTCGCG	400	0.0	39.375	1
TACGGGA	200	0.0	39.375	4
TTTTGCG	1140	0.0	39.276318	1
TTTCGTG	370	0.0	38.91892	1
AGGCACG	105	0.0	38.57143	10
CGTTTGG	660	0.0	38.522728	2
TTTGGGA	7155	0.0	38.396225	4
TGGGCGA	1235	0.0	38.25911	6