##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933942.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1125451 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.43707278237791 33.0 31.0 34.0 31.0 34.0 2 32.665630933732345 34.0 31.0 34.0 31.0 34.0 3 32.72712539239825 34.0 31.0 34.0 31.0 34.0 4 36.09163082177722 37.0 35.0 37.0 35.0 37.0 5 36.12977019879142 37.0 35.0 37.0 35.0 37.0 6 35.78423671932408 37.0 35.0 37.0 35.0 37.0 7 36.08885859979688 37.0 35.0 37.0 35.0 37.0 8 36.09069697392423 37.0 37.0 37.0 35.0 37.0 9 37.94223382448458 39.0 38.0 39.0 35.0 39.0 10 37.64599791550232 39.0 37.0 39.0 35.0 39.0 11 37.600289128536026 39.0 37.0 39.0 35.0 39.0 12 37.37491992099167 39.0 37.0 39.0 35.0 39.0 13 37.26069993273808 39.0 37.0 39.0 34.0 39.0 14 38.4129553396816 40.0 38.0 41.0 34.0 41.0 15 38.50132080383775 40.0 38.0 41.0 34.0 41.0 16 38.58991550942689 40.0 38.0 41.0 35.0 41.0 17 38.573529189631536 40.0 38.0 41.0 34.0 41.0 18 38.511110656972185 40.0 38.0 41.0 34.0 41.0 19 38.546098408549106 40.0 38.0 41.0 34.0 41.0 20 38.50366475306344 40.0 38.0 41.0 34.0 41.0 21 38.41999518415284 40.0 37.0 41.0 34.0 41.0 22 38.4208615035217 40.0 37.0 41.0 34.0 41.0 23 38.37050746767296 40.0 37.0 41.0 34.0 41.0 24 38.357181254448214 40.0 37.0 41.0 34.0 41.0 25 38.26569170936806 40.0 37.0 41.0 34.0 41.0 26 38.16793001205739 40.0 37.0 41.0 34.0 41.0 27 38.14546701722243 40.0 37.0 41.0 34.0 41.0 28 38.04906832905208 40.0 37.0 41.0 34.0 41.0 29 38.026260583534956 40.0 37.0 41.0 34.0 41.0 30 37.98787597149943 40.0 36.0 41.0 34.0 41.0 31 37.922001046691506 40.0 36.0 41.0 34.0 41.0 32 37.82582804582341 40.0 36.0 41.0 34.0 41.0 33 37.785836966691576 40.0 36.0 41.0 33.0 41.0 34 37.72881449303435 40.0 36.0 41.0 33.0 41.0 35 37.6814770256546 40.0 36.0 41.0 33.0 41.0 36 37.594892181001214 40.0 36.0 41.0 33.0 41.0 37 37.54431156931754 40.0 36.0 41.0 33.0 41.0 38 37.51397084368844 40.0 35.0 41.0 33.0 41.0 39 37.522665136021025 40.0 35.0 41.0 33.0 41.0 40 37.4170070487298 40.0 35.0 41.0 33.0 41.0 41 37.286218591480214 39.0 35.0 41.0 33.0 41.0 42 37.259462206706466 39.0 35.0 41.0 33.0 41.0 43 37.16711700464969 39.0 35.0 41.0 33.0 41.0 44 37.071167025485785 39.0 35.0 41.0 32.0 41.0 45 37.08346165226207 39.0 35.0 41.0 32.0 41.0 46 37.00514016158856 39.0 35.0 41.0 32.0 41.0 47 36.93413129492088 39.0 35.0 41.0 32.0 41.0 48 36.884101573502534 39.0 35.0 41.0 32.0 41.0 49 36.87666011225722 39.0 35.0 41.0 32.0 41.0 50 36.82642869391915 39.0 35.0 41.0 32.0 41.0 51 35.9431854429913 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 13.0 10 29.0 11 33.0 12 14.0 13 12.0 14 16.0 15 20.0 16 38.0 17 71.0 18 134.0 19 269.0 20 471.0 21 761.0 22 1227.0 23 1737.0 24 2716.0 25 3911.0 26 5357.0 27 6720.0 28 7978.0 29 9866.0 30 12281.0 31 16613.0 32 22225.0 33 33029.0 34 67340.0 35 84137.0 36 78019.0 37 123818.0 38 241628.0 39 404691.0 40 272.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.423676375070972 4.58438439345649 54.98888889876148 17.003050332711066 2 19.395691149592476 4.4836247868632215 53.68292355686742 22.43776050667688 3 21.071908061745916 4.617082396301572 52.45737042305707 21.853639118895448 4 20.235798804212713 4.681412162768526 50.59776036451164 24.485028668507113 5 19.32807381218729 5.624056489354046 49.332578672905356 25.71529102555331 6 21.842532460320353 6.202047001602025 52.25425185103572 19.701168687041907 7 83.47622419812146 2.1315899137323613 9.1479771220604 5.244208766085774 8 84.19940095126309 3.0886284698312054 7.346565954448484 5.365404624457218 9 78.35276702406414 5.7873687970422525 9.856404232614304 6.003459946279314 10 37.869973903795014 32.35298560310489 16.029485068652477 13.747555424447622 11 31.79587560897809 24.820627464012205 24.448954241455205 18.934542685554504 12 31.10770704366516 20.423456907497528 28.32242363283697 20.14641241600034 13 26.586319617646616 21.85292829274664 30.03142740110409 21.529324688502655 14 20.28431268886873 24.98838243513045 31.119524528389064 23.607780347611758 15 18.143126622127483 24.795304282460986 35.08584558545863 21.9757235099529 16 21.986385902184992 25.079545888714833 31.664905891060563 21.269162318039612 17 22.54562837475821 23.656294232267776 29.698049937314018 24.100027455659998 18 23.001623349217336 23.7871750969167 30.321266763279787 22.889934790586175 19 24.603470075551932 26.385511230608884 27.474319184042663 21.536699509796517 20 27.566282317044454 26.027876824490804 27.554198272514753 18.85164258594999 21 26.377425583166215 25.78699561331413 28.223352238347115 19.612226565172538 22 23.221446335735628 24.24645764231406 28.45161628538248 24.080479736567828 23 23.129038936390835 25.708715883676852 28.36222989717011 22.8000152827622 24 24.339842427613466 23.166535015740354 28.500574436381505 23.993048120264675 25 23.04933755445595 25.523101405569854 25.520613514049035 25.906947525925162 26 21.51493045898933 27.656823797748636 26.790593282159776 24.03765246110226 27 22.606848276824135 26.240147283178032 28.63723076348948 22.515773676508353 28 19.82911739382701 26.382134806402057 30.076831421359078 23.711916378411853 29 22.698278290214326 25.99979919161296 28.14596104139585 23.155961476776866 30 24.190302376558375 23.95395268208034 27.82022495870544 24.035519982655842 31 23.018416616982883 25.992157810513294 26.464412933126365 24.525012639377458 32 24.2861750533786 28.095403531562013 25.30985356092802 22.30856785413137 33 24.5765475351659 25.08372199233907 26.5378945862592 23.80183588623583 34 21.394889693109693 25.248189392519087 29.392039280252984 23.964881634118235 35 21.782201090940433 26.467256237721585 26.698008176277778 25.052534495060204 36 22.065643017776875 27.695119556515568 26.693654366116338 23.54558305959122 37 22.583391013913534 27.110553902391132 27.957503258693627 22.34855182500171 38 22.505822110425065 25.953773198477766 27.50426273556112 24.036141955536046 39 22.737107168592857 23.42225472277336 27.792058472559 26.04857963607478 40 22.735507809758044 23.53829709156596 28.203537959449143 25.52265713922685 41 19.308437239826524 26.127392485323664 27.827333220193506 26.73683705465631 42 21.151342883875 25.52443420459887 28.31140582753047 25.01281708399566 43 22.284133205266155 23.732619189995834 29.6375408613969 24.345706743341115 44 22.122509109681364 23.259386681428158 28.324467258014785 26.293636950875694 45 22.510442480392303 22.160804868448295 26.570059469492673 28.75869318166673 46 21.487830212066097 24.394842600877336 27.749408903630634 26.367918283425933 47 19.348421210696866 24.735150619618267 30.704313204217687 25.212114965467176 48 20.50875604535426 23.308700245501583 30.597333868822364 25.58520984032179 49 22.15689532462986 21.72720091767656 31.12689934968293 24.989004408010658 50 20.835114100924873 22.325538828434112 28.917118559581894 27.92222851105912 51 19.023929073766872 22.462461715347892 27.222775580633897 31.290833630251342 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 195.0 1 673.0 2 1151.0 3 2189.5 4 3228.0 5 2282.5 6 1337.0 7 1404.0 8 1471.0 9 1549.0 10 1627.0 11 1632.0 12 1637.0 13 1588.5 14 1540.0 15 1500.0 16 1460.0 17 1630.0 18 1800.0 19 2164.0 20 2528.0 21 2564.0 22 2600.0 23 3317.5 24 4035.0 25 4551.0 26 6942.0 27 8817.0 28 10187.5 29 11558.0 30 13453.5 31 15349.0 32 18325.5 33 21302.0 34 23925.0 35 26548.0 36 30195.0 37 33842.0 38 37243.5 39 40645.0 40 44920.5 41 49196.0 42 54422.5 43 59649.0 44 65705.5 45 71762.0 46 84813.0 47 97864.0 48 111262.0 49 124660.0 50 123988.0 51 123316.0 52 106054.0 53 88792.0 54 78197.0 55 67602.0 56 62670.0 57 57738.0 58 55707.5 59 53677.0 60 50878.0 61 48079.0 62 41247.5 63 34416.0 64 28234.5 65 22053.0 66 17941.0 67 13829.0 68 11623.5 69 9418.0 70 8019.0 71 6620.0 72 5262.0 73 3904.0 74 3272.5 75 1951.5 76 1262.0 77 963.5 78 665.0 79 502.0 80 339.0 81 219.0 82 99.0 83 97.0 84 95.0 85 59.5 86 24.0 87 15.5 88 7.0 89 6.5 90 6.0 91 3.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1125451.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.89204677606445 #Duplication Level Percentage of deduplicated Percentage of total 1 68.13039334288194 19.684265113342153 2 12.9211534200141 7.466371380235051 3 5.211900254874567 4.517473978680546 4 2.6274858878220995 3.036537806976213 5 1.5430349222504107 2.229071857537992 6 1.001606404524259 1.7363075454432373 7 0.7071972539274038 1.4302663298262415 8 0.541530232476011 1.2516733445879973 9 0.4308823391588024 1.1204165428160568 >10 6.5052457660826475 45.3711082729179 >50 0.30191719400996925 5.401167975534442 >100 0.07113013149186484 3.584121727219521 >500 0.003727343134789651 0.6802454477349604 >1k 0.002174283495293963 1.4629764233476683 >5k 6.212238557982751E-4 1.0279962537999963 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC 6021 0.5349855302452083 No Hit CTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGCT 5434 0.48282866157655907 No Hit GCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC 4677 0.41556673724577975 No Hit TCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC 4382 0.3893550230085539 No Hit TCCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTG 1904 0.1691766234158573 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1572 0.13967733824040318 No Hit CGCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTG 1315 0.11684204821000649 No Hit GCCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTG 1227 0.10902296057313914 No Hit TGCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTG 1225 0.10884525403593759 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.885326860076538E-5 0.0 0.0 0.5053973918011535 0.0 2 8.885326860076538E-5 0.0 0.0 1.944731489864952 0.0 3 8.885326860076538E-5 0.0 0.0 2.7811073072039565 0.0 4 8.885326860076538E-5 0.0 0.0 3.5756332350320004 0.0 5 8.885326860076538E-5 0.0 0.0 4.875467701392597 0.0 6 8.885326860076538E-5 0.0 0.0 5.679678635498124 0.0 7 8.885326860076538E-5 0.0 0.0 6.426668064624759 0.0 8 8.885326860076538E-5 0.0 0.0 7.6240547122886735 0.0 9 8.885326860076538E-5 0.0 0.0 8.177610575671443 0.0 10 8.885326860076538E-5 0.0 0.0 9.254423337844118 0.0 11 8.885326860076538E-5 0.0 0.0 11.224122596185884 0.0 12 8.885326860076538E-5 0.0 0.0 13.023223578814182 0.0 13 8.885326860076538E-5 0.0 0.0 13.636844251771068 0.0 14 8.885326860076538E-5 0.0 0.0 13.862087287674008 0.0 15 8.885326860076538E-5 0.0 0.0 14.214745910750446 0.0 16 8.885326860076538E-5 0.0 0.0 14.960224834310868 0.0 17 8.885326860076538E-5 0.0 0.0 15.948095474614178 0.0 18 8.885326860076538E-5 0.0 0.0 17.042145770895402 0.0 19 8.885326860076538E-5 0.0 0.0 17.841292068690684 0.0 20 8.885326860076538E-5 0.0 0.0 18.719695482077853 0.0 21 8.885326860076538E-5 0.0 0.0 19.93360883770151 0.0 22 8.885326860076538E-5 0.0 0.0 21.17577753274021 0.0 23 8.885326860076538E-5 0.0 0.0 22.352283662282943 0.0 24 8.885326860076538E-5 0.0 0.0 23.211939035995346 0.0 25 8.885326860076538E-5 0.0 0.0 23.97714338518514 0.0 26 8.885326860076538E-5 0.0 0.0 24.68983545263188 0.0 27 8.885326860076538E-5 0.0 0.0 25.36112189691066 0.0 28 8.885326860076538E-5 0.0 0.0 26.0738139643574 0.0 29 8.885326860076538E-5 0.0 0.0 26.863630668949604 0.0 30 8.885326860076538E-5 0.0 0.0 27.704004883375642 0.0 31 8.885326860076538E-5 0.0 0.0 28.491422549715626 0.0 32 1.7770653720153076E-4 0.0 0.0 29.23361390233782 0.0 33 1.7770653720153076E-4 0.0 0.0 29.937864909267486 0.0 34 1.7770653720153076E-4 0.0 0.0 30.669660429463388 0.0 35 1.7770653720153076E-4 0.0 0.0 31.408031091535747 0.0 36 1.7770653720153076E-4 0.0 0.0 32.13254064370639 0.0 37 1.7770653720153076E-4 0.0 0.0 32.89374659580915 0.0 38 1.7770653720153076E-4 0.0 0.0 33.665614940143996 0.0 39 1.7770653720153076E-4 0.0 0.0 34.62487482795786 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATGATCG 25 3.8907536E-5 45.0 27 ACGGGTA 25 3.8907536E-5 45.0 5 TAGCCGT 20 7.033225E-4 45.0 44 ACGATCC 20 7.033225E-4 45.0 35 CGGATTA 20 7.033225E-4 45.0 6 TTCGGTA 20 7.033225E-4 45.0 35 ACCGTAA 25 3.8907536E-5 45.0 20 TATCGCG 30 2.1654614E-6 44.999996 32 TATTGCG 70 0.0 41.785713 1 CTACGAA 110 0.0 40.909092 11 CGTTTTT 960 0.0 40.07812 1 TTGGGAC 2540 0.0 39.419292 5 TTTCGCG 400 0.0 39.375 1 TACGGGA 200 0.0 39.375 4 TTTTGCG 1140 0.0 39.276318 1 TTTCGTG 370 0.0 38.91892 1 AGGCACG 105 0.0 38.57143 10 CGTTTGG 660 0.0 38.522728 2 TTTGGGA 7155 0.0 38.396225 4 TGGGCGA 1235 0.0 38.25911 6 >>END_MODULE