SRR2933938.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933938.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	351290
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	3413	0.9715619573571693	No Hit
CTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGCT	2889	0.82239744940078	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	2743	0.7808363460388853	No Hit
GCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	2312	0.6581456915938398	No Hit
TCCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTG	1070	0.30459164792621485	No Hit
CGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTG	748	0.21292948845683052	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	660	0.18787896040308577	No Hit
TTCCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCT	633	0.18019300293205043	No Hit
TGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTG	624	0.177631017108372	No Hit
GCCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTG	590	0.1679524039966979	No Hit
TTCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTG	469	0.13350792792279884	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGG	30	2.1611831E-6	45.000004	3
CGGAATA	20	7.0265896E-4	45.000004	6
CGTGGCA	25	3.8852555E-5	45.000004	15
CGTGGAG	20	7.0265896E-4	45.000004	12
TCGTTTG	50	2.1827873E-11	45.000004	1
TAATACA	20	7.0265896E-4	45.000004	18
CAAACCC	20	7.0265896E-4	45.000004	24
ACACGAC	25	3.8852555E-5	45.000004	26
CGACGGC	25	3.8852555E-5	45.000004	36
ACGTTCC	20	7.0265896E-4	45.000004	36
GCGCGAC	20	7.0265896E-4	45.000004	9
CGTGAGG	20	7.0265896E-4	45.000004	45
CGGTTGG	40	6.7921064E-9	45.000004	2
GCACGTG	25	3.8852555E-5	45.000004	12
CGACCAA	30	2.1611831E-6	45.000004	29
TTCGTAG	20	7.0265896E-4	45.000004	1
CGCGACC	20	7.0265896E-4	45.000004	10
TAGCCGC	20	7.0265896E-4	45.000004	14
GCCGCGG	20	7.0265896E-4	45.000004	1
ATCGTCA	30	2.1611831E-6	45.000004	40