SRR2933934.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933934.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	840192
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC	8766	1.0433329524680073	No Hit
CTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGCT	8495	1.0110784201706275	No Hit
TCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC	5313	0.6323554616087751	No Hit
GCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC	4373	0.520476272090189	No Hit
CGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTG	2482	0.2954086684948202	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCC	1877	0.223401317794028	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTC	1765	0.21007103138330285	No Hit
TCCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTG	1712	0.20376294942108472	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1504	0.17900670322973797	No Hit
TTCCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCT	1190	0.1416342931139549	No Hit
GCCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTG	1113	0.13246972120658135	No Hit
TGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTG	1038	0.12354319012797074	No Hit
TTCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTG	1027	0.12223396556977452	No Hit
CGTCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCT	958	0.11402155697745277	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACTT	20	7.032201E-4	45.000004	13
TTATGCG	20	7.032201E-4	45.000004	1
CGGTCTA	20	7.032201E-4	45.000004	31
TACGGGA	95	0.0	42.63158	4
GCGCGAC	155	0.0	42.09677	9
CGCGACC	160	0.0	40.781254	10
CGCATAC	40	3.4567347E-7	39.375004	26
TCGTTTG	315	0.0	39.285713	1
CGTTTGG	490	0.0	39.030613	2
CGTTTTT	1345	0.0	38.64312	1
GACCGAT	315	0.0	38.57143	9
GTTTGCG	140	0.0	38.571426	1
TTTGGGA	4640	0.0	38.162716	4
TTGGGAT	2385	0.0	37.924526	5
GAATTCG	280	0.0	37.767857	12
TTTGGGC	1600	0.0	37.125	4
ACGGGAT	85	0.0	37.058823	5
GGGCGAT	1300	0.0	37.038464	7
TTTCTTG	1320	0.0	36.988636	1
TTTTGCG	700	0.0	36.964287	1