##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933931.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1596942 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.43159112854443 33.0 31.0 34.0 31.0 34.0 2 32.66094635872812 34.0 31.0 34.0 31.0 34.0 3 32.71420439815598 34.0 31.0 34.0 31.0 34.0 4 36.08620788982944 37.0 35.0 37.0 35.0 37.0 5 36.1303697942693 37.0 35.0 37.0 35.0 37.0 6 35.81386737902817 37.0 35.0 37.0 35.0 37.0 7 36.126478607238084 37.0 35.0 37.0 35.0 37.0 8 36.14093811797799 37.0 37.0 37.0 35.0 37.0 9 38.005110392237164 39.0 39.0 39.0 37.0 39.0 10 37.638146532560356 39.0 37.0 39.0 35.0 39.0 11 37.56490530025511 39.0 37.0 39.0 35.0 39.0 12 37.35309422634009 39.0 37.0 39.0 35.0 39.0 13 37.241754553390166 39.0 37.0 39.0 34.0 39.0 14 38.13303113074864 40.0 38.0 41.0 33.0 41.0 15 38.28928414432083 40.0 38.0 41.0 33.0 41.0 16 38.45812371394828 40.0 38.0 41.0 34.0 41.0 17 38.49605370764874 40.0 38.0 41.0 34.0 41.0 18 38.479027416149115 40.0 38.0 41.0 35.0 41.0 19 38.499122072060224 40.0 38.0 41.0 34.0 41.0 20 38.40056620716344 40.0 37.0 41.0 34.0 41.0 21 38.33119737598485 40.0 37.0 41.0 34.0 41.0 22 38.40350056545573 40.0 37.0 41.0 34.0 41.0 23 38.36401259407042 40.0 37.0 41.0 34.0 41.0 24 38.32903198738589 40.0 37.0 41.0 34.0 41.0 25 38.24022099738124 40.0 37.0 41.0 34.0 41.0 26 38.206187826483365 40.0 37.0 41.0 34.0 41.0 27 38.20793491560745 40.0 37.0 41.0 34.0 41.0 28 38.137474623373926 40.0 37.0 41.0 34.0 41.0 29 38.118043736090605 40.0 37.0 41.0 34.0 41.0 30 38.059304595908934 40.0 37.0 41.0 34.0 41.0 31 37.96016887275806 40.0 37.0 41.0 34.0 41.0 32 37.92471110409771 40.0 36.0 41.0 34.0 41.0 33 37.88963594169356 40.0 36.0 41.0 34.0 41.0 34 37.838337272111325 40.0 36.0 41.0 33.0 41.0 35 37.81104135278551 40.0 36.0 41.0 33.0 41.0 36 37.71873493213905 40.0 36.0 41.0 33.0 41.0 37 37.609310795257436 40.0 36.0 41.0 33.0 41.0 38 37.57495012342339 40.0 36.0 41.0 33.0 41.0 39 37.55721184614094 40.0 36.0 41.0 33.0 41.0 40 37.48028920273873 40.0 36.0 41.0 33.0 41.0 41 37.370194409064325 40.0 35.0 41.0 33.0 41.0 42 37.35674495379293 40.0 35.0 41.0 33.0 41.0 43 37.2539140432151 39.0 35.0 41.0 33.0 41.0 44 37.153765133611614 39.0 35.0 41.0 32.0 41.0 45 37.19420555035812 39.0 35.0 41.0 32.0 41.0 46 37.13267044138109 39.0 35.0 41.0 32.0 41.0 47 37.05777667567138 39.0 35.0 41.0 32.0 41.0 48 37.00924830081493 39.0 35.0 41.0 32.0 41.0 49 37.02810308702507 39.0 35.0 41.0 32.0 41.0 50 36.96169178342107 39.0 35.0 41.0 32.0 41.0 51 35.99475247065955 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 2.0 9 13.0 10 13.0 11 23.0 12 19.0 13 16.0 14 15.0 15 31.0 16 64.0 17 123.0 18 193.0 19 369.0 20 646.0 21 1013.0 22 1632.0 23 2375.0 24 3638.0 25 5336.0 26 7363.0 27 9342.0 28 10971.0 29 13494.0 30 17541.0 31 23580.0 32 32819.0 33 51838.0 34 103282.0 35 102023.0 36 105681.0 37 171107.0 38 344522.0 39 587513.0 40 343.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.259882951290653 4.234155028798792 58.83519877365615 15.670763246254404 2 19.234011003530497 3.8879934274381913 55.1977466933677 21.68024887566361 3 19.571969426566525 4.087499733866353 53.90834482404495 22.432186015522166 4 18.87970884352719 4.458396109564404 52.52244602496522 24.13944902194319 5 18.0230089759052 5.127487410312961 52.263075302672235 24.58642831110961 6 20.75491783671542 5.61679760442145 54.48093919503651 19.147345363826613 7 83.31385861227271 1.5296735886463002 9.924969097186999 5.231498701893995 8 85.21323880266158 1.8360090723395088 7.5309560397309365 5.4197960852679685 9 79.64985578687266 4.777318149312874 10.079952809807745 5.49287325400672 10 37.02388690384497 33.25894115127537 16.275919851816784 13.441252093062866 11 27.609268213873765 22.793188481485238 29.720240309291135 19.87730299534986 12 26.01421967735835 20.640198579535138 32.64238776361321 20.703193979493307 13 25.29572144761676 21.654825284825623 33.65369562576474 19.395757641792876 14 19.45186487674568 23.90788143839914 35.519511666672926 21.120742018182252 15 16.9921011533293 24.314408413079498 37.622030105038256 21.071460328552945 16 22.16799357772543 24.53558112943363 31.216850705911675 22.07957458692927 17 22.626620127719104 24.872287158832318 29.14194754724968 23.359145166198896 18 23.34875029900898 23.201218328530405 31.63558851855609 21.814442853904524 19 23.141980109484255 25.526600214660274 30.154507803038555 21.176911872816923 20 22.15697251371684 29.093793011893982 29.889751788105016 18.85948268628416 21 21.981950502898666 26.68111928924156 32.88190804675436 18.455022161105415 22 20.380389519469087 23.430656842890976 33.347735860162736 22.841217777477205 23 19.530452577488724 24.98957382296915 31.649302228884956 23.830671370657168 24 20.819103010629064 26.020356406181318 29.795008209440294 23.36553237374933 25 21.326134574705907 25.98472580719901 27.688983068890415 25.000156549204668 26 18.39102484623737 26.022172376955453 29.66068899183564 25.926113784971527 27 18.175487901251266 24.934405883244352 33.8386115463179 23.051494669186482 28 16.817830578693528 25.765306441937152 31.779112829395185 25.63775014997414 29 19.315604449003157 25.261030143862456 31.288675481013083 24.1346899261213 30 22.335563846401435 23.947269218293464 31.557501775267983 22.15966516003712 31 20.384084080699235 26.091492364782187 31.09361517199748 22.430808382521093 32 22.513153264176154 25.04449128396648 28.07822701137549 24.36412844048187 33 22.121028816325204 23.503608772265995 28.513371180669054 25.86199123073975 34 18.345124619428884 23.442304103718232 32.46473572615662 25.74783555069627 35 18.02344731367827 24.76796276884195 31.005321420565057 26.203268496914728 36 20.385399094018442 24.54466098330434 30.73048363685093 24.339456285826287 37 18.539245633216485 27.88166382999508 31.1311243614358 22.447966175352644 38 21.04985653830884 26.06882403994635 27.734883295698904 25.146436126045906 39 20.265357163879465 22.34376702472601 28.869802409855836 28.521073401538693 40 21.1032085072595 21.118550329316907 31.945493324115716 25.832747839307878 41 18.398977545834477 21.94481703155155 29.99351260095858 29.66269282165539 42 18.16008345951199 22.22190912381289 31.066438230067217 28.551569186607907 43 19.624695198698515 22.11902498650546 31.428755709349492 26.82752410544654 44 20.673512250288365 22.507955830581196 29.96840210852993 26.85012981060051 45 19.99158391475708 21.039399051437062 29.363746460422487 29.60527057338338 46 19.909364272465748 21.37829676970109 32.582085009975316 26.130253947857845 47 16.340105025730427 23.212740349993926 35.17629319036008 25.27086143391557 48 17.22899140983204 24.497257884131045 31.95094123643814 26.322809469598766 49 21.30478126318927 20.88153483345043 32.37612887631486 25.437555027045438 50 19.790950454055313 20.82705571022617 30.0459878943631 29.336005941355413 51 17.8156125895618 21.078912070695115 28.782197474923947 32.32327786481913 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 245.0 1 741.5 2 1238.0 3 3705.5 4 6173.0 5 4056.0 6 1939.0 7 2025.0 8 2111.0 9 2299.5 10 2488.0 11 2617.5 12 2747.0 13 2723.0 14 2699.0 15 2697.0 16 2695.0 17 2829.0 18 2963.0 19 3112.5 20 3262.0 21 3875.0 22 4488.0 23 5795.5 24 7103.0 25 8662.0 26 12319.5 27 14418.0 28 16318.5 29 18219.0 30 22001.5 31 25784.0 32 29295.5 33 32807.0 34 38258.0 35 43709.0 36 47684.0 37 51659.0 38 58064.5 39 64470.0 40 73005.5 41 81541.0 42 90188.0 43 98835.0 44 108365.0 45 117895.0 46 138897.0 47 159899.0 48 186336.0 49 212773.0 50 202440.5 51 192108.0 52 157365.0 53 122622.0 54 103985.5 55 85349.0 56 75784.5 57 66220.0 58 58748.5 59 51277.0 60 43606.5 61 35936.0 62 30359.0 63 24782.0 64 20910.5 65 17039.0 66 14015.5 67 10992.0 68 8820.5 69 6649.0 70 5656.5 71 4664.0 72 3735.5 73 2807.0 74 2426.0 75 1612.5 76 1180.0 77 844.5 78 509.0 79 348.5 80 188.0 81 142.0 82 96.0 83 77.0 84 58.0 85 45.5 86 33.0 87 18.5 88 4.0 89 2.5 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1596942.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.96790763651107 #Duplication Level Percentage of deduplicated Percentage of total 1 66.07647143074705 19.140971213524427 2 13.810078942784996 8.000981825350443 3 5.82762182886184 5.064420326369564 4 3.0435635667963337 3.526626731552255 5 1.8105452463967104 2.6223853734672042 6 1.1635629957184208 2.022359123354 7 0.8612761394844525 1.7464557360681512 8 0.6500961848524208 1.5065540990122521 9 0.47780458020453487 1.2456899052900219 >10 5.865022252165155 39.492006947948234 >50 0.31119208062801706 5.663193772015584 >100 0.09312371320654743 5.077070801818345 >500 0.0054778625872008635 1.0389242142296287 >1k 0.0032867175523205185 1.7451235548649444 >5k 6.573435104641036E-4 1.471809303491974 >10k+ 2.1911450348803457E-4 0.6354270716430115 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGC 10011 0.626885635170219 TruSeq Adapter, Index 20 (95% over 22bp) CTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGCT 8923 0.5587554212989576 TruSeq Adapter, Index 22 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGC 7944 0.4974507527511957 TruSeq Adapter, Index 20 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGC 6321 0.3958190090811063 TruSeq Adapter, Index 20 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3842 0.24058481773289198 No Hit TCCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTG 3399 0.21284429866582508 No Hit CGCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTG 3053 0.19117788873985406 No Hit TTCCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCT 2121 0.13281634523983962 No Hit GCCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTG 1849 0.11578379177202427 TruSeq Adapter, Index 20 (95% over 21bp) TGCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTG 1818 0.11384258163414827 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCC 1785 0.11177613213253831 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5810480280435983 0.0 2 0.0 0.0 0.0 2.198389171303654 0.0 3 0.0 0.0 0.0 3.2036229243140952 0.0 4 0.0 0.0 0.0 4.209044536370137 0.0 5 0.0 0.0 0.0 5.792758910467631 0.0 6 0.0 0.0 0.0 6.897495337964685 0.0 7 0.0 0.0 0.0 7.911433226754635 0.0 8 0.0 0.0 0.0 9.537228027066732 0.0 9 0.0 0.0 0.0 10.373326019354492 0.0 10 0.0 0.0 0.0 11.828169088169764 0.0 11 0.0 0.0 0.0 14.441351032160217 0.0 12 0.0 0.0 0.0 16.805118783274533 0.0 13 6.261968186696825E-5 0.0 0.0 17.575153011192644 0.0 14 6.261968186696825E-5 0.0 0.0 17.8707805292866 0.0 15 6.261968186696825E-5 0.0 0.0 18.218194524284538 0.0 16 6.261968186696825E-5 0.0 0.0 19.022544337865746 0.0 17 6.261968186696825E-5 0.0 0.0 20.240747628905748 0.0 18 1.252393637339365E-4 0.0 0.0 21.51775080121883 0.0 19 1.8785904560090472E-4 0.0 0.0 22.470822359234088 0.0 20 1.8785904560090472E-4 0.0 0.0 23.495468213623287 0.0 21 1.8785904560090472E-4 0.0 0.0 24.898775284262047 0.0 22 2.50478727467873E-4 0.0 0.0 26.466709498529063 0.0 23 2.50478727467873E-4 0.0 0.0 27.835074786686054 0.0 24 2.50478727467873E-4 0.0 0.0 28.841122595560766 0.0 25 2.50478727467873E-4 0.0 0.0 29.732952104710126 0.0 26 2.50478727467873E-4 0.0 0.0 30.532292343741975 0.0 27 2.50478727467873E-4 0.0 0.0 31.476033569159057 0.0 28 2.50478727467873E-4 0.0 0.0 32.32766124254982 0.0 29 2.50478727467873E-4 0.0 0.0 33.29770273435103 0.0 30 2.50478727467873E-4 0.0 0.0 34.33944376188991 0.0 31 2.50478727467873E-4 0.0 0.0 35.20804136906663 0.0 32 2.50478727467873E-4 0.0 0.0 36.03643714048475 0.0 33 2.50478727467873E-4 0.0 0.0 36.84166362961209 0.0 34 2.50478727467873E-4 0.0 0.0 37.67951497299213 0.0 35 2.50478727467873E-4 0.0 0.0 38.57698025350952 0.0 36 2.50478727467873E-4 0.0 0.0 39.35421574484233 0.0 37 2.50478727467873E-4 0.0 0.0 40.199644069728265 0.0 38 2.50478727467873E-4 0.0 0.0 41.17601014939804 0.0 39 2.50478727467873E-4 0.0 0.0 42.92203473889471 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGTATG 25 3.891491E-5 45.0 2 TAACCGC 20 7.0341135E-4 45.0 17 CCGCCGT 25 3.891491E-5 45.0 36 ACGTTAT 60 3.6379788E-12 41.249996 24 CGTTTTT 2040 0.0 41.02941 1 TACGGGA 295 0.0 40.42373 4 TTTGGGA 11530 0.0 39.301823 4 TTGGGAC 5100 0.0 38.823532 5 TTGGGAT 7035 0.0 38.69936 5 CTAAACG 35 6.2498184E-6 38.571426 45 GCGCGAC 260 0.0 38.07692 9 TTATCCG 65 9.094947E-12 38.07692 1 GCGATTC 480 0.0 37.968746 9 TTTGGGC 3430 0.0 37.78426 4 TTTTCCG 1005 0.0 37.61194 1 TGGGCGA 2100 0.0 37.607143 6 CAACCCG 90 0.0 37.5 23 CGCGGTA 60 1.5643309E-10 37.499996 31 GCGATCG 30 1.1401211E-4 37.499996 9 ACCGTAC 30 1.1401211E-4 37.499996 22 >>END_MODULE