SRR2933930.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933930.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1133717
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC	4298	0.3791069552630859	No Hit
CTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGCT	3543	0.3125118526051916	No Hit
GCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC	2893	0.25517832051561373	No Hit
TCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC	2512	0.22157205016772263	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1247	0.10999217617800562	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTCA	30	2.165476E-6	45.000004	16
TCGTTAG	25	3.890771E-5	45.000004	1
CTATCGC	25	3.890771E-5	45.000004	15
TTACTCG	30	2.165476E-6	45.000004	1
TGACGTC	25	3.890771E-5	45.000004	18
GCGTTAC	25	3.890771E-5	45.000004	11
TACGCGG	25	3.890771E-5	45.000004	2
TTACCGG	30	2.165476E-6	45.000004	2
GCGTATT	25	3.890771E-5	45.000004	15
TCTATCG	25	3.890771E-5	45.000004	14
AGTCCGT	20	7.033248E-4	45.0	32
CGAACGG	20	7.033248E-4	45.0	11
CACGGTA	20	7.033248E-4	45.0	26
TACGGGT	20	7.033248E-4	45.0	4
TGCGAAA	20	7.033248E-4	45.0	20
GTATCGC	20	7.033248E-4	45.0	41
CGCAATC	20	7.033248E-4	45.0	18
TATCGCC	20	7.033248E-4	45.0	42
AATACCG	20	7.033248E-4	45.0	40
TAGTCCG	20	7.033248E-4	45.0	1