SRR2933929.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933929.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	277759
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

$Duplication level graph$

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTGC	1828	0.658124489215471	No Hit
CTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTGCT	1556	0.5601978693759698	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTGC	1358	0.48891305052221534	No Hit
TCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTGC	1316	0.4737920283411159	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGC	638	0.22969552741765342	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCG	551	0.19837341004251885	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTC	487	0.1753318524332245	No Hit
TCCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTG	463	0.1666912683297391	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	429	0.15445044084980145	No Hit
CGCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTG	405	0.14580985674631605	No Hit
GCCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTG	344	0.12384837214995732	No Hit
TGCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTG	329	0.11844800708527897	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCTTGCG	45	3.8198777E-10	45.000004	1
TGTGCCG	30	2.1595388E-6	45.000004	1
CCTCGCG	30	2.1595388E-6	45.000004	1
TGTTGCG	55	1.8189894E-12	45.000004	1
CGTAGGG	35	1.2074815E-7	45.000004	3
TACGAGA	30	2.1595388E-6	45.000004	35
CGGGCTT	30	2.1595388E-6	45.000004	6
GTACGGG	30	2.1595388E-6	45.000004	3
CTTAATG	20	7.024041E-4	45.0	45
TCGTTAG	20	7.024041E-4	45.0	1
GGTACAT	20	7.024041E-4	45.0	8
ACACGTG	20	7.024041E-4	45.0	13
CGAGTAC	20	7.024041E-4	45.0	18
TACGGGA	50	2.1827873E-11	45.0	4
TAACGCG	20	7.024041E-4	45.0	26
CGACAAT	20	7.024041E-4	45.0	20
ACGGGAT	25	3.8831437E-5	45.0	5
ATCCGAT	20	7.024041E-4	45.0	38
GGCCACT	20	7.024041E-4	45.0	9
CCTCCGG	20	7.024041E-4	45.0	2