SRR2933926.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933926.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	370312
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGC	2800	0.7561191643803064	Illumina PCR Primer Index 7 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGCT	2323	0.627308863876947	Illumina PCR Primer Index 7 (95% over 24bp)
TCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGC	1964	0.5303635853010434	Illumina PCR Primer Index 7 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGC	1761	0.47554494588347124	Illumina PCR Primer Index 7 (95% over 23bp)
TCCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTG	860	0.23223660048823694	Illumina PCR Primer Index 7 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTG	627	0.16931668430944716	Illumina PCR Primer Index 7 (95% over 22bp)
GCCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTG	584	0.1577048542850353	Illumina PCR Primer Index 7 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	580	0.15662468405020633	No Hit
TGCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTG	420	0.11341787465704595	Illumina PCR Primer Index 7 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGACCTA	30	2.1615015E-6	45.000004	29
ACCTAAG	30	2.1615015E-6	45.000004	31
GTTAAGG	30	2.1615015E-6	45.000004	28
GAGCGTA	30	2.1615015E-6	45.000004	9
CGGGCCC	30	2.1615015E-6	45.000004	6
CGGGCAA	30	2.1615015E-6	45.000004	6
GTCCCGT	30	2.1615015E-6	45.000004	18
GGCGCTA	30	2.1615015E-6	45.000004	7
TTGTTCG	30	2.1615015E-6	45.000004	1
TTCATCG	60	0.0	45.000004	15
CTTGTCG	20	7.0270867E-4	45.0	1
CTCACGG	25	3.8856677E-5	45.0	2
TCGTTAG	40	6.7939254E-9	45.0	1
CCGGGTA	20	7.0270867E-4	45.0	5
CCGGGAT	40	6.7939254E-9	45.0	5
GGTAATT	20	7.0270867E-4	45.0	8
CGTGCTC	20	7.0270867E-4	45.0	29
GCGGTCA	25	3.8856677E-5	45.0	14
CTATCGG	20	7.0270867E-4	45.0	2
CGGCATA	20	7.0270867E-4	45.0	27