SRR2933922.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933922.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	636254
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGC	2923	0.4594077208159006	Illumina Single End Adapter 1 (95% over 24bp)
CTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGCT	2901	0.4559499822397973	Illumina Single End Adapter 1 (96% over 25bp)
GCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGC	2448	0.38475200155912576	Illumina Single End Adapter 1 (95% over 24bp)
TCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGC	2204	0.3464025373514351	Illumina Single End Adapter 1 (95% over 24bp)
TCCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTG	879	0.13815237310885276	Illumina Single End Adapter 1 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	864	0.13579482407969143	No Hit
GCCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTG	674	0.10593253637698151	Illumina Single End Adapter 1 (95% over 23bp)
CGCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTG	644	0.1012174383186589	Illumina Single End Adapter 1 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGCG	25	3.8888345E-5	45.000004	19
CACGGCA	25	3.8888345E-5	45.000004	30
ATTACCG	25	3.8888345E-5	45.000004	12
TTCACCG	25	3.8888345E-5	45.000004	1
TTACTCG	25	3.8888345E-5	45.000004	1
CGCAGTC	25	3.8888345E-5	45.000004	37
ATAGTAA	25	3.8888345E-5	45.000004	34
AACTATC	25	3.8888345E-5	45.000004	37
CCCGGAC	25	3.8888345E-5	45.000004	4
TCGTTAT	20	7.0309103E-4	45.0	44
GCCCACG	20	7.0309103E-4	45.0	44
GATCGAC	20	7.0309103E-4	45.0	10
TAGCGCG	35	1.2107921E-7	45.0	1
CGATTGA	20	7.0309103E-4	45.0	10
CGTTCAT	40	6.8066583E-9	45.0	17
ACGGGAT	20	7.0309103E-4	45.0	5
AGACGTC	20	7.0309103E-4	45.0	16
ATATACG	20	7.0309103E-4	45.0	22
GGAACGT	20	7.0309103E-4	45.0	9
GCGATAT	40	6.8066583E-9	45.0	9