##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933922.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 636254 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.3989035825315 33.0 31.0 34.0 31.0 34.0 2 32.61260754352821 34.0 31.0 34.0 31.0 34.0 3 32.681113203217585 34.0 31.0 34.0 31.0 34.0 4 36.060460130702516 37.0 35.0 37.0 35.0 37.0 5 36.09037899958193 37.0 35.0 37.0 35.0 37.0 6 35.69514219164044 37.0 35.0 37.0 35.0 37.0 7 36.02073071446309 37.0 35.0 37.0 35.0 37.0 8 36.02596132990912 37.0 35.0 37.0 35.0 37.0 9 37.86239300656656 39.0 38.0 39.0 35.0 39.0 10 37.572519779836355 39.0 37.0 39.0 35.0 39.0 11 37.5392013252569 39.0 37.0 39.0 35.0 39.0 12 37.293920352563596 39.0 37.0 39.0 35.0 39.0 13 37.18048295177712 39.0 37.0 39.0 34.0 39.0 14 38.383123721029655 40.0 38.0 41.0 34.0 41.0 15 38.48435844804119 40.0 38.0 41.0 34.0 41.0 16 38.56691509994436 40.0 38.0 41.0 35.0 41.0 17 38.530607273195926 40.0 38.0 41.0 35.0 41.0 18 38.499968566012946 40.0 38.0 41.0 35.0 41.0 19 38.52016175929739 40.0 37.0 41.0 34.0 41.0 20 38.4740512436857 40.0 37.0 41.0 34.0 41.0 21 38.366011058476644 40.0 37.0 41.0 34.0 41.0 22 38.370969769934646 40.0 37.0 41.0 34.0 41.0 23 38.31848601344746 40.0 37.0 41.0 34.0 41.0 24 38.28050904198638 40.0 37.0 41.0 34.0 41.0 25 38.17691205084762 40.0 37.0 41.0 34.0 41.0 26 38.10447242767825 40.0 37.0 41.0 34.0 41.0 27 38.08326863170998 40.0 37.0 41.0 34.0 41.0 28 37.99401654056399 40.0 36.0 41.0 34.0 41.0 29 37.98941617655842 40.0 36.0 41.0 34.0 41.0 30 37.92800988284553 40.0 36.0 41.0 34.0 41.0 31 37.77864029145593 40.0 36.0 41.0 33.0 41.0 32 37.70680891593609 40.0 36.0 41.0 33.0 41.0 33 37.69270291424494 40.0 36.0 41.0 33.0 41.0 34 37.643450571627056 40.0 36.0 41.0 33.0 41.0 35 37.612970606078704 40.0 36.0 41.0 33.0 41.0 36 37.52359120728514 40.0 36.0 41.0 33.0 41.0 37 37.41183552480613 40.0 35.0 41.0 33.0 41.0 38 37.369162315678956 40.0 35.0 41.0 33.0 41.0 39 37.373223586806525 39.0 35.0 41.0 33.0 41.0 40 37.22219270920104 39.0 35.0 41.0 33.0 41.0 41 37.105503462453676 39.0 35.0 41.0 32.0 41.0 42 37.110754509991295 39.0 35.0 41.0 32.0 41.0 43 37.02278806891587 39.0 35.0 41.0 32.0 41.0 44 36.907090564460105 39.0 35.0 41.0 32.0 41.0 45 36.89662304677063 39.0 35.0 41.0 32.0 41.0 46 36.796131733552954 39.0 35.0 41.0 31.0 41.0 47 36.68179060563863 39.0 35.0 41.0 31.0 41.0 48 36.64164154567201 39.0 35.0 40.0 31.0 41.0 49 36.63960619501017 39.0 35.0 40.0 31.0 41.0 50 36.553998874663264 39.0 35.0 40.0 31.0 41.0 51 35.62421454324845 37.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 7.0 9 13.0 10 22.0 11 10.0 12 12.0 13 5.0 14 8.0 15 15.0 16 21.0 17 41.0 18 65.0 19 140.0 20 274.0 21 420.0 22 715.0 23 1070.0 24 1565.0 25 2257.0 26 3173.0 27 3983.0 28 4851.0 29 5742.0 30 7266.0 31 9646.0 32 12877.0 33 18744.0 34 37035.0 35 55206.0 36 46301.0 37 73631.0 38 140333.0 39 210680.0 40 125.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.149861533287023 4.575531155796271 53.89687137526836 16.377735935648342 2 19.619365850745144 4.871167804053099 52.96721120810243 22.542255137099335 3 21.527566034948308 5.074702870237358 50.97995454645472 22.417776548359615 4 19.913273629713917 5.082089857195396 50.687618466838714 24.317018046251967 5 19.313984666501113 6.398545235079073 48.939888786553794 25.347581311866012 6 21.895500853432747 7.1939822775180975 52.551653899228924 18.358862969820226 7 83.2307537555756 2.6118499844401764 9.397347600172258 4.760048659811962 8 83.64851144354299 3.8929421268864317 7.339364467649712 5.1191819619208685 9 77.07032097244182 6.384242770968827 10.225475989148988 6.319960267440362 10 37.287938464826944 30.544719561684484 17.556038940423164 14.611303033065411 11 31.205461969590758 24.40471887013677 25.590251691934352 18.799567468338115 12 29.9341143631317 20.72725672451568 29.040288941209013 20.2983399711436 13 25.337836775878813 23.933523404175062 29.1774982947062 21.55114152523992 14 19.390054915175387 26.959830507941795 30.19045852756918 23.45965604931364 15 17.818669902271733 25.339565645166868 35.59946185014161 21.242302602419787 16 20.276650520075314 23.690853024106726 33.80049477095625 22.232001684861707 17 19.848991126185453 24.004092705114623 28.886105234701866 27.26081093399806 18 21.51263489109695 24.250535163629618 30.52020105178121 23.716628893492224 19 23.45839868983142 25.94891348423743 28.995338339719673 21.59734948621148 20 27.398020287495246 25.383101717238716 28.218133009772828 19.000744985493213 21 24.492576863956845 27.164308593737722 27.462931470764822 20.88018307154061 22 22.58406233988313 24.302715582141722 27.477548274745622 25.63567380322953 23 22.291097580526017 25.94246951689105 28.138919362393004 23.627513540189923 24 22.707440739075903 22.8125874257765 29.756197996397667 24.72377383874993 25 20.741087678820094 25.596852829216004 27.245879790146706 26.4161797018172 26 21.02273620283723 27.508353582059996 27.644148406139685 23.82476180896309 27 21.013777516526417 27.178925397718523 28.40123598437102 23.406061101384037 28 18.215209648976664 27.871416132550834 30.58165449647468 23.331719721997818 29 20.512091083120893 25.954728771842696 28.863158424151358 24.670021720885053 30 22.69125223574233 26.38364552521477 27.39471971885442 23.53038252018848 31 22.546970235157655 30.103072043554935 24.58310674667664 22.76685097461077 32 22.833491027168396 30.485623666020174 24.21768664715664 22.463198659654793 33 23.54358479475178 27.733892439183094 24.307273510264768 24.415249255800354 34 20.88191194082866 28.212160552232284 26.34969681919485 24.5562306877442 35 21.903516520131898 26.268754302526983 25.304359579664727 26.5233695976764 36 22.927164308593735 27.059161907037126 25.014381049077883 24.999292735291252 37 20.10564963049348 30.21073344921997 26.42859612670411 23.25502079358244 38 19.792252779550306 30.640750392138987 24.84715223794271 24.719844590367998 39 22.268622279781344 27.2765279275258 26.348910969518464 24.10593882317439 40 24.14507413705847 26.856412690529254 26.802346232793823 22.196166939618454 41 19.289623326533114 27.02301282192332 27.249494698658083 26.437869152885483 42 21.39271423048028 25.87017134666344 25.267110305003975 27.470004117852305 43 21.656916891681625 25.112455088690993 26.31606245304548 26.9145655665819 44 21.17110462173912 25.923923464528322 26.438812172497144 26.46615974123542 45 22.117581971979742 26.301288479129404 24.447311922596953 27.133817626293897 46 22.332276103568702 26.748122605123108 26.112213046990668 24.807388244317522 47 19.145655665818996 27.936484485755685 28.187013362587898 24.730846485837418 48 20.26046201674174 24.92809475461058 28.63887692651048 26.172566302137195 49 20.973699183030675 24.21674362754497 29.17812697444731 25.631430214977037 50 20.868552496330082 25.091865827169652 27.18756974415878 26.852011932341487 51 19.000273475687383 25.481175756851826 24.988448009757107 30.530102757703688 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 69.0 1 357.5 2 646.0 3 1232.0 4 1818.0 5 1326.5 6 835.0 7 837.0 8 839.0 9 888.0 10 937.0 11 978.0 12 1019.0 13 988.5 14 958.0 15 937.5 16 917.0 17 1000.5 18 1084.0 19 1139.5 20 1195.0 21 1510.0 22 1825.0 23 2201.0 24 2577.0 25 2766.5 26 3802.0 27 4648.0 28 6054.5 29 7461.0 30 8526.5 31 9592.0 32 10800.0 33 12008.0 34 14042.0 35 16076.0 36 17564.0 37 19052.0 38 20251.0 39 21450.0 40 25408.5 41 29367.0 42 34385.5 43 39404.0 44 43272.0 45 47140.0 46 53354.5 47 59569.0 48 66383.5 49 73198.0 50 70510.0 51 67822.0 52 58203.0 53 48584.0 54 41784.5 55 34985.0 56 31951.0 57 28917.0 58 28251.0 59 27585.0 60 25222.5 61 22860.0 62 19623.0 63 16386.0 64 13526.5 65 10667.0 66 9237.0 67 7807.0 68 6340.5 69 4874.0 70 4292.0 71 3710.0 72 3082.5 73 2455.0 74 2042.0 75 1235.0 76 841.0 77 553.5 78 266.0 79 189.5 80 113.0 81 91.5 82 70.0 83 44.5 84 19.0 85 15.0 86 11.0 87 9.5 88 8.0 89 5.5 90 3.0 91 2.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 636254.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.873960798595387 #Duplication Level Percentage of deduplicated Percentage of total 1 67.58951504051886 18.83987492635496 2 13.138181590454124 7.324263172342918 3 5.582878921320089 4.66850844588542 4 2.911330769058624 3.246012789139386 5 1.6873127632791491 2.351604490930633 6 1.1113818062269358 1.8587167739425048 7 0.7658264582599967 1.4942631673246407 8 0.5844816764744702 1.3033455470037358 9 0.4523987161818071 1.1349129672167917 >10 5.268369054894547 37.754697243630176 >50 0.8283450596418216 14.092090549788086 >100 0.07369414668537483 3.5038346681002213 >500 0.003998907184477703 0.75971619712353 >1k 0.002285089819701545 1.6681590612169568 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGC 2923 0.4594077208159006 Illumina Single End Adapter 1 (95% over 24bp) CTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGCT 2901 0.4559499822397973 Illumina Single End Adapter 1 (96% over 25bp) GCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGC 2448 0.38475200155912576 Illumina Single End Adapter 1 (95% over 24bp) TCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGC 2204 0.3464025373514351 Illumina Single End Adapter 1 (95% over 24bp) TCCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTG 879 0.13815237310885276 Illumina Single End Adapter 1 (95% over 23bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 864 0.13579482407969143 No Hit GCCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTG 674 0.10593253637698151 Illumina Single End Adapter 1 (95% over 23bp) CGCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTG 644 0.1012174383186589 Illumina Single End Adapter 1 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.5716993527742064E-4 0.0 0.0 0.48691245948944917 0.0 2 1.5716993527742064E-4 0.0 0.0 1.7845074451398342 0.0 3 1.5716993527742064E-4 0.0 0.0 2.534679546218963 0.0 4 1.5716993527742064E-4 0.0 0.0 3.330902438334376 0.0 5 1.5716993527742064E-4 0.0 0.0 4.603035894469818 0.0 6 1.5716993527742064E-4 0.0 0.0 5.394386518591632 0.0 7 1.5716993527742064E-4 0.0 0.0 6.120668789508592 0.0 8 1.5716993527742064E-4 0.0 0.0 7.280268571985402 0.0 9 1.5716993527742064E-4 0.0 0.0 7.8185756003105675 0.0 10 1.5716993527742064E-4 0.0 0.0 8.928195343369158 0.0 11 1.5716993527742064E-4 0.0 0.0 11.00959679624804 0.0 12 1.5716993527742064E-4 0.0 0.0 13.029701974368727 0.0 13 1.5716993527742064E-4 0.0 0.0 13.681328526028913 0.0 14 1.5716993527742064E-4 0.0 0.0 13.917397768815599 0.0 15 1.5716993527742064E-4 0.0 0.0 14.249497842056789 0.0 16 1.5716993527742064E-4 0.0 0.0 15.050750172101079 0.0 17 1.5716993527742064E-4 0.0 0.0 16.166813882506045 0.0 18 1.5716993527742064E-4 0.0 0.0 17.478711332266673 0.0 19 1.5716993527742064E-4 0.0 0.0 18.33638766907556 0.0 20 1.5716993527742064E-4 0.0 0.0 19.24844480349043 0.0 21 1.5716993527742064E-4 0.0 0.0 20.480657096065407 0.0 22 1.5716993527742064E-4 0.0 0.0 21.80528531058351 0.0 23 1.5716993527742064E-4 0.0 0.0 22.946967720438693 0.0 24 3.143398705548413E-4 0.0 0.0 23.82460463902781 0.0 25 3.143398705548413E-4 0.0 0.0 24.648960949557882 0.0 26 3.143398705548413E-4 0.0 0.0 25.350724710571566 0.0 27 3.143398705548413E-4 0.0 0.0 26.004394471390356 0.0 28 3.143398705548413E-4 0.0 0.0 26.688555199652967 0.0 29 3.143398705548413E-4 0.0 0.0 27.425839366039348 0.0 30 3.143398705548413E-4 0.0 0.0 28.258054173333292 0.0 31 3.143398705548413E-4 0.0 0.0 29.042646490238177 0.0 32 3.143398705548413E-4 0.0 0.0 29.82598144766084 0.0 33 3.143398705548413E-4 0.0 0.0 30.53340332634451 0.0 34 3.143398705548413E-4 0.0 0.0 31.252141440368156 0.0 35 4.71509805832262E-4 0.0 0.0 32.00860033885838 0.0 36 4.71509805832262E-4 0.0 0.0 32.7421124267981 0.0 37 4.71509805832262E-4 0.0 0.0 33.53990701826629 0.0 38 4.71509805832262E-4 0.0 0.0 34.26540343950686 0.0 39 4.71509805832262E-4 0.0 0.0 34.9835128737894 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACCGCG 25 3.8888345E-5 45.000004 19 CACGGCA 25 3.8888345E-5 45.000004 30 ATTACCG 25 3.8888345E-5 45.000004 12 TTCACCG 25 3.8888345E-5 45.000004 1 TTACTCG 25 3.8888345E-5 45.000004 1 CGCAGTC 25 3.8888345E-5 45.000004 37 ATAGTAA 25 3.8888345E-5 45.000004 34 AACTATC 25 3.8888345E-5 45.000004 37 CCCGGAC 25 3.8888345E-5 45.000004 4 TCGTTAT 20 7.0309103E-4 45.0 44 GCCCACG 20 7.0309103E-4 45.0 44 GATCGAC 20 7.0309103E-4 45.0 10 TAGCGCG 35 1.2107921E-7 45.0 1 CGATTGA 20 7.0309103E-4 45.0 10 CGTTCAT 40 6.8066583E-9 45.0 17 ACGGGAT 20 7.0309103E-4 45.0 5 AGACGTC 20 7.0309103E-4 45.0 16 ATATACG 20 7.0309103E-4 45.0 22 GGAACGT 20 7.0309103E-4 45.0 9 GCGATAT 40 6.8066583E-9 45.0 9 >>END_MODULE