SRR2933921.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933921.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	475491
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	2853	0.6000113566818299	No Hit
CTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGCT	2390	0.5026383254362333	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	2056	0.4323951452288266	No Hit
TCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	1852	0.38949212498238667	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTC	813	0.17098115421743	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCG	800	0.1682471382213333	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGC	786	0.16530281330245997	No Hit
TCCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTG	742	0.15604922070028665	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	721	0.15163273332197666	No Hit
GCCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTG	566	0.11903485029159332	No Hit
CGCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTG	563	0.11840392352326333	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGGA	60	0.0	45.000004	4
ATCGGTT	30	2.1628057E-6	45.000004	32
ATACGAC	30	2.1628057E-6	45.000004	23
TCGGTTA	30	2.1628057E-6	45.000004	33
GCGAGAC	35	1.209919E-7	45.0	21
CTCGTAG	20	7.0291094E-4	45.0	1
AGTCACG	25	3.887344E-5	45.0	15
CGAAAGG	20	7.0291094E-4	45.0	13
GCGAAGG	25	3.887344E-5	45.0	3
ACCGAGC	20	7.0291094E-4	45.0	33
CACGCAA	20	7.0291094E-4	45.0	15
ATACTCG	20	7.0291094E-4	45.0	44
CGGATGG	25	3.887344E-5	45.0	2
GGGCGTA	20	7.0291094E-4	45.0	7
CGCTAAC	20	7.0291094E-4	45.0	14
GTCACGA	25	3.887344E-5	45.0	16
AATCTAG	20	7.0291094E-4	45.0	33
ATAAGCG	20	7.0291094E-4	45.0	33
TAGGGCG	25	3.887344E-5	45.0	5
CCGGTTA	25	3.887344E-5	45.0	31