##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933921.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 475491 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.444309145704125 33.0 31.0 34.0 31.0 34.0 2 32.67748285456507 34.0 31.0 34.0 31.0 34.0 3 32.7306405378861 34.0 31.0 34.0 31.0 34.0 4 36.103856855334804 37.0 35.0 37.0 35.0 37.0 5 36.13228010624807 37.0 35.0 37.0 35.0 37.0 6 35.740872066979186 37.0 35.0 37.0 35.0 37.0 7 36.073038185791106 37.0 35.0 37.0 35.0 37.0 8 36.06803703960748 37.0 36.0 37.0 35.0 37.0 9 37.928129028730304 39.0 38.0 39.0 35.0 39.0 10 37.64206472888025 39.0 37.0 39.0 35.0 39.0 11 37.61568568069637 39.0 37.0 39.0 35.0 39.0 12 37.378709586511626 39.0 37.0 39.0 35.0 39.0 13 37.2830610884328 39.0 37.0 39.0 34.0 39.0 14 38.54150762054382 40.0 38.0 41.0 35.0 41.0 15 38.60653093328791 40.0 38.0 41.0 35.0 41.0 16 38.68705401364063 40.0 38.0 41.0 35.0 41.0 17 38.6604962028724 40.0 38.0 41.0 35.0 41.0 18 38.626005539537026 40.0 38.0 41.0 35.0 41.0 19 38.647560101032404 40.0 38.0 41.0 35.0 41.0 20 38.58498057797098 40.0 38.0 41.0 35.0 41.0 21 38.50375296272695 40.0 38.0 41.0 34.0 41.0 22 38.48227831862222 40.0 38.0 41.0 34.0 41.0 23 38.42465367378142 40.0 37.0 41.0 34.0 41.0 24 38.41235270488821 40.0 37.0 41.0 34.0 41.0 25 38.31330561461731 40.0 37.0 41.0 34.0 41.0 26 38.22938394207251 40.0 37.0 41.0 34.0 41.0 27 38.223779209280515 40.0 37.0 41.0 34.0 41.0 28 38.1348353596598 40.0 37.0 41.0 34.0 41.0 29 38.142412790147446 40.0 37.0 41.0 34.0 41.0 30 38.118254604188095 40.0 37.0 41.0 34.0 41.0 31 38.06043857822756 40.0 37.0 41.0 34.0 41.0 32 37.95204956560692 40.0 36.0 41.0 34.0 41.0 33 37.89832404819439 40.0 36.0 41.0 34.0 41.0 34 37.860182421959614 40.0 36.0 41.0 34.0 41.0 35 37.80982184731152 40.0 36.0 41.0 34.0 41.0 36 37.70391658306887 40.0 36.0 41.0 33.0 41.0 37 37.631488293153815 40.0 36.0 41.0 33.0 41.0 38 37.59586406472467 40.0 36.0 41.0 33.0 41.0 39 37.59834571001344 40.0 36.0 41.0 33.0 41.0 40 37.5337955923456 40.0 36.0 41.0 33.0 41.0 41 37.41509303015199 40.0 35.0 41.0 33.0 41.0 42 37.35692789137965 40.0 35.0 41.0 33.0 41.0 43 37.23770376305755 39.0 35.0 41.0 33.0 41.0 44 37.13123907708032 39.0 35.0 41.0 32.0 41.0 45 37.14422144688333 39.0 35.0 41.0 33.0 41.0 46 37.074382059807654 39.0 35.0 41.0 32.0 41.0 47 36.99574124431377 39.0 35.0 41.0 32.0 41.0 48 36.96104658132331 39.0 35.0 41.0 32.0 41.0 49 36.937296394674135 39.0 35.0 41.0 32.0 41.0 50 36.892832882220695 39.0 35.0 41.0 32.0 41.0 51 35.95106952602678 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 6.0 10 6.0 11 9.0 12 6.0 13 5.0 14 6.0 15 11.0 16 16.0 17 27.0 18 61.0 19 103.0 20 200.0 21 313.0 22 491.0 23 702.0 24 1106.0 25 1613.0 26 2276.0 27 2866.0 28 3136.0 29 3952.0 30 4909.0 31 6480.0 32 8827.0 33 12909.0 34 25564.0 35 39242.0 36 31562.0 37 51324.0 38 101294.0 39 176335.0 40 134.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.391227173595293 4.953195749236053 52.70467790136932 16.950899175799332 2 19.45588875499221 5.535120538559089 52.01044814728355 22.99854255916516 3 20.87168842312473 5.848270524573547 51.197183542906174 22.082857509395552 4 18.82348982420277 5.163714980935496 51.22010721548883 24.7926879793729 5 18.948833942177664 6.069725820257376 49.25182600722201 25.72961423034295 6 20.86348637513644 7.329896885535163 52.69794801584047 19.10866872348793 7 82.36412466271706 2.6002595212107065 9.8550761213146 5.180539694757629 8 82.74751782893894 3.987246866922823 7.57364492703332 5.69159037710493 9 76.57432001867544 5.975086805007876 10.726596297301105 6.723996879015585 10 36.74370282507976 30.706154270007215 17.601384673947564 14.948758230965463 11 30.749477908099205 25.177342999131426 24.902679545985098 19.170499546784274 12 28.333869621086414 21.867921790317798 30.040105911573512 19.758102677022276 13 24.566605887387986 25.358839599487688 29.647669461672248 20.42688505145208 14 19.239691182377793 28.53702804048867 29.03398802500994 23.189292752123595 15 17.031447493222796 25.672620512270473 35.30687226466958 21.98905972983716 16 18.469119289324087 25.44653842028556 33.082434788460766 23.001907501929583 17 18.73074358925826 25.32960665922173 30.023912124519708 25.9157376270003 18 20.300279079940527 25.25894286116877 31.66936913632435 22.77140892256636 19 22.99223329148186 26.145184661749642 28.444912732312496 22.417669314456003 20 26.24949788744687 24.634745978367626 29.729269323709595 19.38648681047591 21 24.124746840634206 27.57318224740321 27.93154865181465 20.37052226014793 22 22.35436632870023 25.74412554601454 27.487165897987552 24.414342227297677 23 21.098822059723528 27.00282444883289 27.46718655032377 24.431166941119812 24 22.107043035514867 23.906235869869253 30.057771861086753 23.92894923352913 25 19.883867412842722 27.338687798507227 27.51345451333464 25.26399027531541 26 20.250856483088008 29.10507244090845 26.966441005192525 23.677630070811016 27 21.726383885289103 28.127556567842504 27.917247645065835 22.22881190180256 28 19.032536893442778 27.151933475081545 31.91963675442858 21.895892877047093 29 20.822055517349437 25.137594612726634 29.649982859822792 24.390367010101137 30 21.832379582368542 25.853065568012855 29.087827109240767 23.226727740377843 31 22.39411471510502 27.244890018948837 27.700629454605867 22.660365811340277 32 24.857252818665337 27.43753299221226 25.97315196291833 21.73206222620407 33 23.84692875364623 26.8621277794953 25.703115306073094 23.587828160785378 34 21.010071694311776 25.386810686216982 29.233991810570547 24.369125808900694 35 22.058041056507903 25.244221236574404 27.703363470601968 24.994374236315725 36 22.68560288207348 28.672887604602398 26.39587289769943 22.245636615624694 37 22.711260570652232 26.376103858958423 30.091000670885464 20.821634899503884 38 21.62165004174632 26.579051969437906 27.94353626041292 23.855761728402854 39 22.368877644371818 25.826987261588545 28.260051189191802 23.54408390484783 40 23.73967120303013 24.286684711172242 29.210016593374004 22.763627492423623 41 20.723420632567176 25.35463342103215 28.66468555661411 25.257260389786556 42 23.15417116201989 25.188489372038585 27.484431881991455 24.172907583950064 43 23.318843048554022 25.31530565247292 27.60725229289303 23.75859900608003 44 21.989900965528264 24.749574650203684 27.681491342633198 25.579033041634858 45 22.03679985530746 24.274486793651196 26.768540308859684 26.92017304218166 46 22.369718880062926 25.19542956649022 28.62283408098155 23.812017472465303 47 20.665585678803595 25.032440151338303 31.52720030452732 22.774773865330786 48 21.493782216698108 23.518426216269077 30.511408207516023 24.47638335951679 49 21.42669367033235 23.367003791869877 31.497336437493033 23.70896610030474 50 21.786111619357673 23.028196117276668 29.665335411185488 25.520356852180164 51 20.08029594671613 23.274678174770923 27.096622228391283 29.548403650121664 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 68.0 1 306.0 2 544.0 3 981.5 4 1419.0 5 1008.5 6 598.0 7 619.5 8 641.0 9 674.0 10 707.0 11 736.5 12 766.0 13 825.5 14 885.0 15 812.0 16 739.0 17 792.5 18 846.0 19 1097.5 20 1349.0 21 1370.5 22 1392.0 23 1590.5 24 1789.0 25 2135.0 26 3314.5 27 4148.0 28 5240.0 29 6332.0 30 7213.5 31 8095.0 32 9063.5 33 10032.0 34 11861.5 35 13691.0 36 14240.5 37 14790.0 38 15805.5 39 16821.0 40 20310.5 41 23800.0 42 27357.0 43 30914.0 44 32689.0 45 34464.0 46 41115.0 47 47766.0 48 50881.5 49 53997.0 50 52233.0 51 50469.0 52 42593.0 53 34717.0 54 29686.5 55 24656.0 56 22472.5 57 20289.0 58 18805.5 59 17322.0 60 16457.0 61 15592.0 62 13662.5 63 11733.0 64 9909.5 65 8086.0 66 6333.0 67 4580.0 68 3877.0 69 3174.0 70 2798.5 71 2423.0 72 1968.0 73 1513.0 74 1221.5 75 749.5 76 569.0 77 379.0 78 189.0 79 126.0 80 63.0 81 58.5 82 54.0 83 51.0 84 48.0 85 27.5 86 7.0 87 3.5 88 0.0 89 0.5 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 475491.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.126819775446407 #Duplication Level Percentage of deduplicated Percentage of total 1 70.44911622264364 21.224078277790625 2 12.263401686707025 7.389145848986561 3 4.802411825379054 4.340441866520021 4 2.3561770190864957 2.8393648165226963 5 1.3864430221766513 2.088455952902061 6 0.8803955537784144 1.5914110907871974 7 0.6594180115318041 1.390631731307133 8 0.5089358733165911 1.226609546613469 9 0.38351389486252546 1.0398648592712525 >10 5.842325837244512 43.582599944649864 >50 0.40454151222880824 7.439280050360593 >100 0.055580486027958 2.850614775693761 >500 0.004924853192350709 1.0578792732164146 >1k 0.0028142018242004055 1.939621965378363 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC 2853 0.6000113566818299 No Hit CTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGCT 2390 0.5026383254362333 Illumina Single End Adapter 1 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC 2056 0.4323951452288266 No Hit TCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC 1852 0.38949212498238667 No Hit GAATCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTC 813 0.17098115421743 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCG 800 0.1682471382213333 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGC 786 0.16530281330245997 No Hit TCCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTG 742 0.15604922070028665 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 721 0.15163273332197666 No Hit GCCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTG 566 0.11903485029159332 No Hit CGCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTG 563 0.11840392352326333 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5251413801733367 0.0 2 0.0 0.0 0.0 2.046516127539743 0.0 3 0.0 0.0 0.0 2.850316830392163 0.0 4 0.0 0.0 0.0 3.6694700846072794 0.0 5 0.0 0.0 0.0 5.160560347093846 0.0 6 0.0 0.0 0.0 6.024719710783169 0.0 7 0.0 0.0 0.0 6.849130688067703 0.0 8 0.0 0.0 0.0 8.21214281658328 0.0 9 0.0 0.0 0.0 8.90931689558793 0.0 10 0.0 0.0 0.0 10.323854710183788 0.0 11 0.0 0.0 0.0 12.262061742493549 0.0 12 0.0 0.0 0.0 14.262099598099649 0.0 13 0.0 0.0 0.0 14.848020256955442 0.0 14 0.0 0.0 0.0 15.058539488654885 0.0 15 0.0 0.0 0.0 15.390406968796466 0.0 16 0.0 0.0 0.0 16.160768552927394 0.0 17 0.0 0.0 0.0 17.267414104578215 0.0 18 0.0 0.0 0.0 18.485102767455114 0.0 19 0.0 0.0 0.0 19.22854480947063 0.0 20 0.0 0.0 0.0 20.10048560330269 0.0 21 0.0 0.0 0.0 21.191778603590816 0.0 22 0.0 0.0 0.0 22.34153748441085 0.0 23 0.0 0.0 0.0 23.377939855854265 0.0 24 0.0 0.0 0.0 24.163233373502337 0.0 25 0.0 0.0 0.0 24.866506411267512 0.0 26 0.0 0.0 0.0 25.46904147502266 0.0 27 0.0 0.0 0.0 26.07052499416393 0.0 28 0.0 0.0 0.0 26.689884771741212 0.0 29 0.0 0.0 0.0 27.31197856531459 0.0 30 0.0 0.0 0.0 28.072455630075016 0.0 31 0.0 0.0 0.0 28.770260635847997 0.0 32 0.0 0.0 0.0 29.437360538895582 0.0 33 0.0 0.0 0.0 30.048728577407353 0.0 34 0.0 0.0 0.0 30.63759356118202 0.0 35 0.0 0.0 0.0 31.331192388499467 0.0 36 0.0 0.0 0.0 31.964011937134458 0.0 37 0.0 0.0 0.0 32.612604654977694 0.0 38 0.0 0.0 0.0 33.20420365474846 0.0 39 0.0 0.0 0.0 33.79979852405198 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGGGA 60 0.0 45.000004 4 ATCGGTT 30 2.1628057E-6 45.000004 32 ATACGAC 30 2.1628057E-6 45.000004 23 TCGGTTA 30 2.1628057E-6 45.000004 33 GCGAGAC 35 1.209919E-7 45.0 21 CTCGTAG 20 7.0291094E-4 45.0 1 AGTCACG 25 3.887344E-5 45.0 15 CGAAAGG 20 7.0291094E-4 45.0 13 GCGAAGG 25 3.887344E-5 45.0 3 ACCGAGC 20 7.0291094E-4 45.0 33 CACGCAA 20 7.0291094E-4 45.0 15 ATACTCG 20 7.0291094E-4 45.0 44 CGGATGG 25 3.887344E-5 45.0 2 GGGCGTA 20 7.0291094E-4 45.0 7 CGCTAAC 20 7.0291094E-4 45.0 14 GTCACGA 25 3.887344E-5 45.0 16 AATCTAG 20 7.0291094E-4 45.0 33 ATAAGCG 20 7.0291094E-4 45.0 33 TAGGGCG 25 3.887344E-5 45.0 5 CCGGTTA 25 3.887344E-5 45.0 31 >>END_MODULE