##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933920.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 773578 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.371617341754806 33.0 31.0 34.0 31.0 34.0 2 32.590319269679334 34.0 31.0 34.0 31.0 34.0 3 32.65715286629144 34.0 31.0 34.0 31.0 34.0 4 36.04528567255015 37.0 35.0 37.0 35.0 37.0 5 36.08471026838922 37.0 35.0 37.0 35.0 37.0 6 35.612083073717194 37.0 35.0 37.0 33.0 37.0 7 35.99594740284755 37.0 35.0 37.0 35.0 37.0 8 35.96233088324642 37.0 35.0 37.0 35.0 37.0 9 37.83698088621962 39.0 38.0 39.0 35.0 39.0 10 37.529836680981106 39.0 37.0 39.0 35.0 39.0 11 37.48281233437352 39.0 37.0 39.0 35.0 39.0 12 37.31542520599086 39.0 37.0 39.0 35.0 39.0 13 37.22603796902187 39.0 37.0 39.0 34.0 39.0 14 38.44657164500541 40.0 38.0 41.0 34.0 41.0 15 38.504290452934285 40.0 38.0 41.0 34.0 41.0 16 38.59342432178785 40.0 38.0 41.0 35.0 41.0 17 38.541750153184296 40.0 38.0 41.0 34.0 41.0 18 38.50344761614213 40.0 38.0 41.0 34.0 41.0 19 38.51329665528234 40.0 38.0 41.0 34.0 41.0 20 38.428065431023114 40.0 37.0 41.0 34.0 41.0 21 38.38936603677974 40.0 37.0 41.0 34.0 41.0 22 38.40021820682595 40.0 37.0 41.0 34.0 41.0 23 38.325443588106175 40.0 37.0 41.0 34.0 41.0 24 38.285235619420405 40.0 37.0 41.0 34.0 41.0 25 38.19908528939551 40.0 37.0 41.0 34.0 41.0 26 38.15016973078345 40.0 37.0 41.0 34.0 41.0 27 38.12580502547901 40.0 37.0 41.0 34.0 41.0 28 38.064272768873984 40.0 37.0 41.0 34.0 41.0 29 38.03052956521514 40.0 37.0 41.0 34.0 41.0 30 37.97167318615576 40.0 37.0 41.0 34.0 41.0 31 37.921772594360235 40.0 37.0 41.0 34.0 41.0 32 37.76075974239185 40.0 36.0 41.0 33.0 41.0 33 37.72830406242163 40.0 36.0 41.0 33.0 41.0 34 37.715829560819984 40.0 36.0 41.0 33.0 41.0 35 37.64411992068027 40.0 36.0 41.0 33.0 41.0 36 37.55326676818627 40.0 36.0 41.0 33.0 41.0 37 37.494769758188575 40.0 36.0 41.0 33.0 41.0 38 37.432026246868446 40.0 36.0 41.0 33.0 41.0 39 37.3650013314753 40.0 35.0 41.0 33.0 41.0 40 37.24089490652526 39.0 35.0 41.0 32.0 41.0 41 37.1808647608903 39.0 35.0 41.0 32.0 41.0 42 37.15870797773463 39.0 35.0 41.0 32.0 41.0 43 37.078983631902666 39.0 35.0 41.0 32.0 41.0 44 37.00523411989483 39.0 35.0 41.0 32.0 41.0 45 37.01336129000566 39.0 35.0 41.0 32.0 41.0 46 36.90502444485236 39.0 35.0 41.0 32.0 41.0 47 36.80064195207206 39.0 35.0 41.0 31.0 41.0 48 36.74346866120805 39.0 35.0 41.0 31.0 41.0 49 36.754459149562166 39.0 35.0 41.0 31.0 41.0 50 36.68984898743243 39.0 35.0 41.0 31.0 41.0 51 35.75683512199158 38.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 6.0 9 18.0 10 13.0 11 8.0 12 9.0 13 10.0 14 6.0 15 11.0 16 20.0 17 52.0 18 94.0 19 220.0 20 391.0 21 759.0 22 1059.0 23 1517.0 24 2105.0 25 2960.0 26 3927.0 27 4903.0 28 5868.0 29 7121.0 30 8891.0 31 11891.0 32 15968.0 33 22581.0 34 42558.0 35 60539.0 36 55584.0 37 87033.0 38 167583.0 39 269727.0 40 146.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.42021877561151 4.75310828384468 52.572461988319205 16.2542109522246 2 19.509603427191568 7.936368407581394 51.10939039114349 21.444637774083546 3 20.01452988580337 8.286817877447394 49.937692126715085 21.76096011003415 4 19.04668953874076 4.715103066529814 51.55834317935619 24.67986421537324 5 20.805788168743163 5.447414481797569 47.99322111021772 25.75357623924155 6 20.911530576102216 8.980865536506984 51.4506617302974 18.656942157093404 7 80.66335909242507 2.2672568247804357 11.790407689980842 5.278976392813653 8 80.52982375403643 5.4611170431423846 8.325857250335455 5.683201952485723 9 74.54387275749828 5.697938669403732 10.68605880725667 9.072129765841325 10 38.36613760991135 26.073518119698335 19.82101352416951 15.739330746220809 11 30.22927229057703 23.555090760078492 25.47642254562565 20.739214403718822 12 25.44824180625612 21.32803673320596 30.502806439686754 22.720915020851162 13 24.047219543472025 23.688496829020476 32.389881821871874 19.87440180563563 14 20.30797152969707 26.758129109152534 30.135293402863063 22.798605958287336 15 17.8265152318189 25.282906183991788 35.32507387748876 21.56550470670055 16 19.072543428070603 25.583845455791142 30.95783489189196 24.385776224246296 17 19.79464255705307 25.550364669108998 29.49372913914305 25.161263634694887 18 20.249024662025032 24.747084327630827 31.14721463123305 23.856676379111093 19 21.82494848612551 25.940112050756355 28.866901592341044 23.36803787077709 20 23.96771883378276 25.934424195103787 30.86566577643108 19.232191194682372 21 23.607832694311366 27.047951208540056 29.081488873778728 20.262727223369847 22 22.356892259086997 24.06079283537019 29.066235079074122 24.516079826468694 23 21.2485360235167 26.541214977675164 28.268771862695164 23.941477136112972 24 22.01743069218618 24.041531687819457 29.224719420666045 24.716318199328317 25 19.822306218636 27.73488904803394 27.08828327589461 25.354521457435446 26 19.78804981527396 26.193221627295504 28.843633091944188 25.17509546548635 27 20.07011574786253 26.211448619273042 29.369113392573208 24.34932224029122 28 17.2480344580637 25.38683881909775 31.66752415399611 25.69760256884244 29 18.53956549953592 25.288723309091004 29.507690239381162 26.664020951991912 30 20.3025422129378 26.584908050642596 29.69396751200267 23.41858222441693 31 22.07935075713115 27.119954290323665 25.891894547156202 24.908800405388984 32 21.08358820959231 28.724188123240317 26.56176881969239 23.63045484747498 33 20.796997846371017 25.613318889627163 27.05247563917278 26.53720762482904 34 20.523851505601247 25.083960505598657 27.63069787403468 26.76149011476541 35 19.037640677475316 24.314548759142582 29.198219184102957 27.44959137927914 36 20.64407209098501 24.650390781537222 27.987998624573084 26.717538502904688 37 19.470693323750158 25.568203852746592 31.38015817409492 23.580944649408334 38 18.869848935724644 27.987093738446546 27.11853232641052 26.024524999418286 39 21.520518939266626 27.509572402524373 27.277921554128998 23.691987104080003 40 22.105850993694236 25.1182169089607 29.293232227390124 23.48269986995494 41 20.678974841580295 24.084190605213696 28.083399476200206 27.15343507700581 42 20.185941172060218 22.26019871299339 29.990123814276 27.563736300670392 43 20.8571081390629 23.508036681498183 27.79293102957944 27.84192414985948 44 19.955195209791384 23.822937053535647 28.550837795283734 27.67102994138923 45 20.65467218561024 23.64816476166592 27.04200481399419 28.655158238729644 46 22.01575018937974 24.193164748738976 29.05692767891538 24.734157382965908 47 18.65215918756738 23.744082691079633 32.694957715964 24.908800405388984 48 19.134204954122275 23.962030978130194 30.10284677175411 26.800917295993422 49 20.081749998060957 21.86036831450739 32.32809102637355 25.729790661058093 50 20.920967245707608 22.802871850026758 29.314044608300648 26.962116295964982 51 19.56790394763036 22.12614629681816 27.167396177243923 31.138553578307555 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 74.0 1 367.5 2 661.0 3 1346.5 4 2032.0 5 1492.0 6 952.0 7 940.5 8 929.0 9 1047.5 10 1166.0 11 1177.5 12 1189.0 13 1171.5 14 1154.0 15 1240.0 16 1326.0 17 1261.5 18 1197.0 19 1370.5 20 1544.0 21 1726.5 22 1909.0 23 2283.5 24 2658.0 25 3564.5 26 5350.0 27 6229.0 28 6836.5 29 7444.0 30 9686.5 31 11929.0 32 13531.0 33 15133.0 34 17584.5 35 20036.0 36 21490.5 37 22945.0 38 25459.0 39 27973.0 40 32781.5 41 37590.0 42 41712.0 43 45834.0 44 51110.0 45 56386.0 46 72805.5 47 89225.0 48 90719.0 49 92213.0 50 89305.0 51 86397.0 52 72660.0 53 58923.0 54 50490.0 55 42057.0 56 37244.5 57 32432.0 58 28787.5 59 25143.0 60 23740.5 61 22338.0 62 19567.5 63 16797.0 64 14651.5 65 12506.0 66 10375.0 67 8244.0 68 6982.5 69 5721.0 70 4569.5 71 3418.0 72 2863.0 73 2308.0 74 1845.0 75 1124.0 76 866.0 77 622.5 78 379.0 79 322.5 80 266.0 81 214.5 82 163.0 83 95.0 84 27.0 85 15.0 86 3.0 87 4.0 88 5.0 89 4.0 90 3.0 91 1.5 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 773578.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.440061829684872 #Duplication Level Percentage of deduplicated Percentage of total 1 68.96540327371011 19.613803332134673 2 12.747663069420167 7.250886517565999 3 5.282808717020232 4.507302196393608 4 2.7108097355232164 3.0838238594716785 5 1.5916733484437215 2.2633644221200497 6 1.0083659336475224 1.720679369993007 7 0.6931692490627082 1.3799643411245757 8 0.5146846482405142 1.1710130574999866 9 0.39366061664752106 1.0076159049630635 >10 5.498447185434176 40.57003051099067 >50 0.5220245294218859 8.896858284386031 >100 0.062091023308452065 3.1197081574640464 >500 0.003219534541919737 0.6841121032929545 >1k 0.005519202071862406 4.0230500667070945 >5k 4.599335059885338E-4 0.7077878758925767 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGC 5411 0.6994769758188574 No Hit GAATCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTC 4762 0.6155811049435223 TruSeq Adapter, Index 13 (95% over 22bp) GAATGATACCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCG 4417 0.5709831458495459 No Hit CCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGC 4255 0.5500414954923744 TruSeq Adapter, Index 13 (96% over 25bp) CTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGCT 3929 0.507899655884733 Illumina PCR Primer Index 4 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGC 3721 0.4810116109816981 TruSeq Adapter, Index 13 (96% over 25bp) TCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTGC 3024 0.39091080666720096 TruSeq Adapter, Index 13 (96% over 25bp) TCCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTG 1210 0.1564160304455401 Illumina PCR Primer Index 4 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCT 1162 0.15021109700637816 RNA PCR Primer, Index 13 (95% over 23bp) GAATGATCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTC 1125 0.1454281274803575 No Hit GAATGACTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCT 1092 0.1411622357409337 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTCAAGTCT 1043 0.13482803285512257 No Hit CGCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTG 1016 0.13133775779559398 Illumina PCR Primer Index 4 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 953 0.12319378265669396 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTA 944 0.12203035763685109 No Hit GCCTGTCTCTTATACACATCTGACGCCTCAAGTCTCGTATGCCGTCTTCTG 870 0.11246441858480981 TruSeq Adapter, Index 13 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.585388932984134E-4 0.0 0.0 0.5437072926065633 0.0 2 2.585388932984134E-4 0.0 0.0 2.1201481944936384 0.0 3 2.585388932984134E-4 0.0 0.0 2.962855717199817 0.0 4 2.585388932984134E-4 0.0 0.0 3.9771037956094926 0.0 5 2.585388932984134E-4 0.0 0.0 5.952987287642617 0.0 6 2.585388932984134E-4 0.0 0.0 6.790394763036177 0.0 7 2.585388932984134E-4 0.0 0.0 7.683517369935546 0.0 8 2.585388932984134E-4 0.0 0.0 8.97840941702065 0.0 9 2.585388932984134E-4 0.0 0.0 9.49018715630486 0.0 10 2.585388932984134E-4 0.0 0.0 11.137596984402348 0.0 11 2.585388932984134E-4 0.0 0.0 13.057894614376314 0.0 12 2.585388932984134E-4 0.0 0.0 15.67702287293589 0.0 13 2.585388932984134E-4 0.0 0.0 16.326472572901505 0.0 14 2.585388932984134E-4 0.0 0.0 16.58488219675327 0.0 15 2.585388932984134E-4 0.0 0.0 17.065893807734966 0.0 16 2.585388932984134E-4 0.0 0.0 17.923208777912507 0.0 17 2.585388932984134E-4 0.0 0.0 19.005323315813015 0.0 18 2.585388932984134E-4 0.0 0.0 20.17120445514221 0.0 19 2.585388932984134E-4 0.0 0.0 21.127410552006392 0.0 20 2.585388932984134E-4 0.0 0.0 22.021567314478954 0.0 21 2.585388932984134E-4 0.0 0.0 23.217826773770714 1.292694466492067E-4 22 2.585388932984134E-4 0.0 0.0 24.442525511325297 1.292694466492067E-4 23 2.585388932984134E-4 0.0 0.0 25.59560897543622 1.292694466492067E-4 24 2.585388932984134E-4 0.0 0.0 26.48485349893611 1.292694466492067E-4 25 2.585388932984134E-4 0.0 0.0 27.265382417804023 1.292694466492067E-4 26 2.585388932984134E-4 0.0 0.0 27.960205693543507 1.292694466492067E-4 27 2.585388932984134E-4 0.0 0.0 28.648177688610588 1.292694466492067E-4 28 2.585388932984134E-4 0.0 0.0 29.35321325063536 1.292694466492067E-4 29 2.585388932984134E-4 0.0 0.0 30.054629268153956 1.292694466492067E-4 30 2.585388932984134E-4 0.0 0.0 30.869802398723852 1.292694466492067E-4 31 2.585388932984134E-4 0.0 0.0 31.620340805969146 1.292694466492067E-4 32 2.585388932984134E-4 0.0 0.0 32.327703218033605 1.292694466492067E-4 33 2.585388932984134E-4 0.0 0.0 33.00998735744812 1.292694466492067E-4 34 2.585388932984134E-4 0.0 0.0 33.69925204698169 1.292694466492067E-4 35 2.585388932984134E-4 0.0 0.0 34.41941213426442 1.292694466492067E-4 36 2.585388932984134E-4 0.0 0.0 35.112684176644116 1.292694466492067E-4 37 2.585388932984134E-4 0.0 0.0 35.76717538502905 1.292694466492067E-4 38 2.585388932984134E-4 0.0 0.0 36.41675435444131 1.292694466492067E-4 39 2.585388932984134E-4 0.0 0.0 37.11623133026017 1.292694466492067E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGATAT 35 1.2112469E-7 45.000004 9 AACCGTG 20 7.031855E-4 45.0 11 TCCGCGA 20 7.031855E-4 45.0 29 CGCGGAT 25 3.8896185E-5 45.0 4 TATTGCG 40 6.8102963E-9 45.0 1 TCTCGAT 20 7.031855E-4 45.0 44 ACAGCGT 20 7.031855E-4 45.0 28 GTCGTAC 20 7.031855E-4 45.0 9 CTCGATA 20 7.031855E-4 45.0 45 CCGAATG 25 3.8896185E-5 45.0 22 CCGCGAG 25 3.8896185E-5 45.0 30 CCGTTCG 40 6.8102963E-9 45.0 1 TACGTCC 20 7.031855E-4 45.0 35 CGCTTAC 20 7.031855E-4 45.0 3 CTTACGA 25 3.8896185E-5 45.0 19 CACGGGA 115 0.0 44.999996 4 CGTAGTT 30 2.1645792E-6 44.999996 26 CGTTCGG 80 0.0 42.1875 2 CGTAGGG 65 0.0 41.538464 3 TTACACG 125 0.0 41.399998 34 >>END_MODULE